The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Probable tRNA pseudouridine synthase domain
".
FunFam 1: H/ACA ribonucleoprotein complex subunit
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
6 | P28007 (/IPI) P28007 (/IPI) Q6AYA1 (/IPI) Q9CY66 (/IPI) Q9NY12 (/IPI) Q9NY12 (/IPI) |
Box H/ACA snoRNA binding GO:0034513
Interacting selectively and non-covalently with box H/ACA small nucleolar RNA.
|
4 | P28007 (/IPI) P28007 (/IPI) Q9NY12 (/IPI) Q9NY12 (/IPI) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
2 | Q9NY12 (/HDA) Q9NY12 (/HDA) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
2 | Q9NY12 (/IPI) Q9NY12 (/IPI) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
2 | Q57US8 (/IDA) Q57US8 (/IDA) |
Telomerase RNA binding GO:0070034
Interacting selectively and non-covalently with the telomerase RNA template.
|
2 | Q9NY12 (/IPI) Q9NY12 (/IPI) |
SnoRNA binding GO:0030515
Interacting selectively and non-covalently with small nucleolar RNA.
|
1 | Q9CY66 (/ISO) |
Box H/ACA snoRNA binding GO:0034513
Interacting selectively and non-covalently with box H/ACA small nucleolar RNA.
|
1 | Q06975 (/ISO) |
There are 14 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA modification GO:0009451
The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
|
12 |
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
Q8I700 (/ISS)
(2 more) |
Telomere maintenance via telomerase GO:0007004
The maintenance of proper telomeric length by the addition of telomeric repeats by telomerase.
|
4 | Q5RJV1 (/ISS) Q6AYA1 (/ISS) Q7ZVE0 (/ISS) Q9CY66 (/ISS) |
Telomere maintenance via telomerase GO:0007004
The maintenance of proper telomeric length by the addition of telomeric repeats by telomerase.
|
2 | Q9NY12 (/IDA) Q9NY12 (/IDA) |
Telomere maintenance via telomerase GO:0007004
The maintenance of proper telomeric length by the addition of telomeric repeats by telomerase.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
RRNA pseudouridine synthesis GO:0031118
The intramolecular conversion of uridine to pseudouridine in an rRNA molecule.
|
2 | Q7KVQ0 (/ISS) Q7KVQ0 (/ISS) |
RRNA pseudouridine synthesis GO:0031118
The intramolecular conversion of uridine to pseudouridine in an rRNA molecule.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
SnRNA pseudouridine synthesis GO:0031120
The intramolecular conversion of uridine to pseudouridine in an snRNA molecule.
|
2 | P28007 (/IDA) P28007 (/IDA) |
SnoRNA guided rRNA pseudouridine synthesis GO:0000454
The intramolecular conversion of uridine to pseudouridine in an rRNA molecule during ribosome biogenesis using a snoRNA guide that targets the position of pseudouridylation.
|
1 | Q6AYA1 (/IDA) |
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
|
1 | Q7ZVE0 (/IMP) |
RRNA pseudouridine synthesis GO:0031118
The intramolecular conversion of uridine to pseudouridine in an rRNA molecule.
|
1 | Q06975 (/ISO) |
SnRNA pseudouridine synthesis GO:0031120
The intramolecular conversion of uridine to pseudouridine in an snRNA molecule.
|
1 | Q06975 (/ISO) |
Cellular response to drug GO:0035690
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
1 | A0A1D8PF56 (/IMP) |
Definitive hemopoiesis GO:0060216
A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
|
1 | Q7ZVE0 (/IGI) |
Definitive hemopoiesis GO:0060216
A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
|
1 | Q7ZVE0 (/IMP) |
There are 24 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | A0A024RDJ3 (/IDA) A0A024RDJ3 (/IDA) Q57US8 (/IDA) Q57US8 (/IDA) Q9NY12 (/IDA) Q9NY12 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
5 | P28007 (/IDA) P28007 (/IDA) Q06975 (/IDA) Q8VZT0 (/IDA) Q8VZT0 (/IDA) |
Box H/ACA snoRNP complex GO:0031429
A box H/ACA RNP complex that is located in the nucleolus.
|
5 | P28007 (/IDA) P28007 (/IDA) Q6AYA1 (/IDA) Q9NY12 (/IDA) Q9NY12 (/IDA) |
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
|
4 | A0A024RDJ3 (/IDA) A0A024RDJ3 (/IDA) Q9NY12 (/IDA) Q9NY12 (/IDA) |
Telomerase holoenzyme complex GO:0005697
Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits.
|
4 | Q5RJV1 (/ISS) Q6AYA1 (/ISS) Q7ZVE0 (/ISS) Q9CY66 (/ISS) |
Chloroplast thylakoid membrane GO:0009535
The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
|
3 | Q8VZT0 (/IDA) Q8VZT0 (/IDA) Q9FK53 (/IDA) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
2 | Q9NY12 (/HDA) Q9NY12 (/HDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | Q7KVQ0 (/HDA) Q7KVQ0 (/HDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
Telomerase holoenzyme complex GO:0005697
Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits.
|
2 | Q9NY12 (/IDA) Q9NY12 (/IDA) |
Telomerase holoenzyme complex GO:0005697
Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | Q7KVQ0 (/HDA) Q7KVQ0 (/HDA) |
Small nucleolar ribonucleoprotein complex GO:0005732
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
|
2 | Q7KVQ0 (/ISS) Q7KVQ0 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | Q57US8 (/IDA) Q57US8 (/IDA) |
Box H/ACA snoRNP complex GO:0031429
A box H/ACA RNP complex that is located in the nucleolus.
|
2 | P28007 (/IPI) P28007 (/IPI) |
Box H/ACA snoRNP complex GO:0031429
A box H/ACA RNP complex that is located in the nucleolus.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
Box H/ACA scaRNP complex GO:0072589
A box H/ACA RNP complex that is located in the Cajal body of the nucleoplasm. In higher eukaryotes, box H/ACA RNP located in Cajal bodies mediate pseudouridylation of spliceosomal snRNAs.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
Box H/ACA telomerase RNP complex GO:0090661
A box H/ACA ribonucleoprotein complex that contains the RNA component of vertebrate telomerase, the enzyme essential for the replication of chromosome termini in most eukaryotes. This ribonucleoprotein complex is a structural box H/ACA RNP, which does not have the catalytic pseudouridylation function shared by the majority of H/ACA RNPs present in the cell.
|
2 | Q9NY12 (/IDA) Q9NY12 (/IDA) |
Box H/ACA telomerase RNP complex GO:0090661
A box H/ACA ribonucleoprotein complex that contains the RNA component of vertebrate telomerase, the enzyme essential for the replication of chromosome termini in most eukaryotes. This ribonucleoprotein complex is a structural box H/ACA RNP, which does not have the catalytic pseudouridylation function shared by the majority of H/ACA RNPs present in the cell.
|
2 | Q9NY12 (/TAS) Q9NY12 (/TAS) |
Dense fibrillar component GO:0001651
A structure found in the nucleolus, which contains newly synthesized preribosomal RNA (pre-rRNA) and a collection of proteins.
|
1 | Q9CY66 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q06975 (/HDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q4Q2B2 (/ISO) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
1 | Q9FK53 (/IDA) |
Box H/ACA snoRNP complex GO:0031429
A box H/ACA RNP complex that is located in the nucleolus.
|
1 | Q06975 (/ISO) |