The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Actin; Chain A, domain 2
".
FunFam 4: Actin-like 6A, isoform CRA_a
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 4 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
O96019 (/IPI)
(7 more) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
15 |
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
(5 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
15 |
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
(5 more) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
2 | Q9Z2N8 (/IDA) Q9Z2N8 (/IDA) |
There are 18 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
17 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(7 more) |
Neural retina development GO:0003407
The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells.
|
15 |
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
O96019 (/IEP)
(5 more) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
15 |
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
O96019 (/IC)
(5 more) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
15 |
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
(5 more) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
15 |
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
O96019 (/NAS)
(5 more) |
Signal transduction GO:0007165
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
|
15 |
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
(5 more) |
Protein deubiquitination GO:0016579
The removal of one or more ubiquitin groups from a protein.
|
15 |
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
(5 more) |
ATP-dependent chromatin remodeling GO:0043044
Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
|
15 |
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
(5 more) |
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
|
15 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(5 more) |
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
|
15 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(5 more) |
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
|
3 | Q4R333 (/ISS) Q9Z2N8 (/ISS) Q9Z2N8 (/ISS) |
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
|
3 | Q4R333 (/ISS) Q9Z2N8 (/ISS) Q9Z2N8 (/ISS) |
Blastocyst formation GO:0001825
The initial formation of a blastocyst from a solid ball of cells known as a morula.
|
2 | Q9Z2N8 (/IMP) Q9Z2N8 (/IMP) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
Nervous system development GO:0007399
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
|
2 | Q9Z2N8 (/IMP) Q9Z2N8 (/IMP) |
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
Spinal cord development GO:0021510
The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.
|
1 | Q4KM87 (/IEP) |
There are 19 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
17 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(7 more) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
17 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(7 more) |
NpBAF complex GO:0071564
A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.
|
17 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(7 more) |
NpBAF complex GO:0071564
A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.
|
16 |
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
O96019 (/ISS)
(6 more) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
15 |
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
(5 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
15 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(5 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
15 |
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
O96019 (/TAS)
(5 more) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
15 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(5 more) |
Ino80 complex GO:0031011
A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
|
15 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(5 more) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
15 |
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
O96019 (/HDA)
(5 more) |
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
|
15 |
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
O96019 (/IDA)
(5 more) |
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
|
3 | Q4R333 (/ISS) Q9Z2N8 (/ISS) Q9Z2N8 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
Ino80 complex GO:0031011
A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |
NpBAF complex GO:0071564
A SWI/SNF-type complex that is found in neural stem or progenitor cells, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, PHF10/BAF45A, ACTL6A/BAF53A genes. The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells.
|
2 | Q9Z2N8 (/ISO) Q9Z2N8 (/ISO) |