The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Transcriptional Coactivator Pc4; Chain A
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: SUB1p Transcriptional coactivator

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
8 P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA)
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
8 P54000 (/ISS) P54000 (/ISS) P54000 (/ISS) P54000 (/ISS) P54000 (/ISS) P54000 (/ISS) P54000 (/ISS) P54000 (/ISS)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
8 P54000 (/IPI) P54000 (/IPI) P54000 (/IPI) P54000 (/IPI) P54000 (/IPI) P54000 (/IPI) P54000 (/IPI) P54000 (/IPI)

There are 13 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Double-strand break repair via nonhomologous end joining GO:0006303
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
8 P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP)
Termination of RNA polymerase II transcription GO:0006369
The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
8 P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI)
Hyperosmotic response GO:0006972
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
8 P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI)
Positive regulation of transcription from RNA polymerase II promoter by pheromones GO:0007329
Any process involving pheromones that activates or increases the rate of transcription from an RNA polymerase II promoter.
8 P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP)
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
8 P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP)
Regulation of transcription from RNA polymerase II promoter in response to stress GO:0043618
Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
8 P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA)
Regulation of transcription from RNA polymerase II promoter in response to stress GO:0043618
Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
8 P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI)
Regulation of transcription from RNA polymerase II promoter in response to stress GO:0043618
Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
8 P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP)
Positive regulation of transcription by RNA polymerase III GO:0045945
Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase III.
8 P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA)
Positive regulation of transcription by RNA polymerase III GO:0045945
Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase III.
8 P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI) P54000 (/IGI)
Positive regulation of transcription by RNA polymerase III GO:0045945
Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase III.
8 P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP)
RNA polymerase III preinitiation complex assembly GO:0070898
The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase III promoter.
8 P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA)
Negative regulation of ascospore formation GO:0075297
Any process that stops, prevents, or reduces the frequency, rate or extent of ascospore formation, a process in which a sexual spore, named ascospore, from Ascomycete fungi was produced inside an ascus.
8 P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP) P54000 (/IMP)

There are 2 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
8 P54000 (/HDA) P54000 (/HDA) P54000 (/HDA) P54000 (/HDA) P54000 (/HDA) P54000 (/HDA) P54000 (/HDA) P54000 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
8 P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA) P54000 (/IDA)
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