The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Transcriptional Coactivator Pc4; Chain A
".
FunFam 1: Activated RNA polymerase II transcriptional coacti...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 15 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA helicase activity GO:0003678
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
|
37 |
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
(27 more) |
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
|
37 |
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
(27 more) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
37 |
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
(27 more) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
37 |
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
(27 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
37 |
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
(27 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
37 |
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
(27 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
37 |
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
(27 more) |
Activating transcription factor binding GO:0033613
Interacting selectively and non-covalently with an activating transcription factor, any protein whose activity is required to initiate or upregulate transcription.
|
37 |
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
Q6IBA2 (/IPI)
(27 more) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
37 |
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
(27 more) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
37 |
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
P53999 (/IPI)
(27 more) |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
1 | P11031 (/IDA) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
1 | P11031 (/ISO) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
1 | P11031 (/ISO) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
1 | P11031 (/ISO) |
Sequence-specific double-stranded DNA binding GO:1990837
Interacting selectively and non-covalently with double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.
|
1 | P11031 (/IDA) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
37 |
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
(27 more) |
DNA duplex unwinding GO:0032508
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
|
37 |
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
(27 more) |
Protein homooligomerization GO:0051260
The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
|
37 |
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
Q6IBA2 (/IMP)
(27 more) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
1 | P11031 (/ISO) |
SMAD protein signal transduction GO:0060395
The cascade of processes by which a signal interacts with a receptor, causing a change in the activity of a SMAD protein, and ultimately effecting a change in the functioning of the cell.
|
1 | P11031 (/IDA) |
There are 7 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
75 |
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
(65 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
74 |
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
(64 more) |
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
|
37 |
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
P53999 (/IDA)
(27 more) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
37 |
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
P53999 (/HDA)
(27 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | P11031 (/ISO) |
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
|
1 | P11031 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | P11031 (/ISO) |