The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Structure-specific recognition protein (SSRP1)
".
FunFam 3: FACT complex subunit POB3
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
10 | O94529 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | O94529 (/ISM) |
There are 14 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA-dependent DNA replication GO:0006261
A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
|
9 | Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) Q04636 (/IGI) |
DNA-dependent DNA replication GO:0006261
A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
|
9 | Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) Q04636 (/IMP) |
DNA-dependent DNA replication GO:0006261
A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
|
9 | Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) Q04636 (/IPI) |
DNA replication-independent nucleosome organization GO:0034724
The formation or destruction of chromatin structures, occurring outside the context of DNA replication.
|
9 | Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) |
Positive regulation of RNA polymerase II transcriptional preinitiation complex assembly GO:0045899
Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly.
|
9 | Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) |
Nucleosome assembly GO:0006334
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
1 | O94529 (/ISO) |
Cellular response to starvation GO:0009267
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment.
|
1 | Q5ALL8 (/IMP) |
Filamentous growth GO:0030447
The process in which a multicellular organism, a unicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.
|
1 | Q5ALL8 (/IMP) |
Chromatin silencing at silent mating-type cassette GO:0030466
Repression of transcription at silent mating-type loci by alteration of the structure of chromatin.
|
1 | O94529 (/IMP) |
Chromatin silencing at centromere GO:0030702
Repression of transcription of centromeric DNA by altering the structure of chromatin.
|
1 | O94529 (/IMP) |
Cellular protein localization GO:0034613
Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
|
1 | O94529 (/IMP) |
Filamentous growth of a population of unicellular organisms in response to starvation GO:0036170
The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to deprivation of nourishment.
|
1 | Q5ALL8 (/IMP) |
Filamentous growth of a population of unicellular organisms in response to biotic stimulus GO:0036180
The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to a biotic (living) stimulus.
|
1 | Q5ALL8 (/IMP) |
Histone exchange GO:0043486
The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.
|
1 | O94529 (/IC) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
FACT complex GO:0035101
An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer.
|
10 | O94529 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
9 | Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) |
Replication fork protection complex GO:0031298
A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling.
|
9 | Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) Q04636 (/IDA) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
1 | O94529 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O94529 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O94529 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O94529 (/HDA) |
Nuclear replication fork GO:0043596
The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.
|
1 | O94529 (/ISS) |