The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: DNA helicase

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
15 Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS)
(5 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
15 F4KAB8 (/IPI) F4KAB8 (/IPI) P29458 (/IPI) P30665 (/IPI) P30665 (/IPI) P30665 (/IPI) P33991 (/IPI) P49717 (/IPI) P49717 (/IPI) P49731 (/IPI)
(5 more)
DNA-dependent ATPase activity GO:0008094
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
15 Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS)
(5 more)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
6 P29458 (/IDA) P30664 (/IDA) P30664 (/IDA) Q5XK83 (/IDA) Q6NZV2 (/IDA) Q6PHK9 (/IDA)
DNA replication origin binding GO:0003688
Interacting selectively and non-covalently with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally.
4 P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA)
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
3 P30665 (/IMP) P30665 (/IMP) P30665 (/IMP)
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
2 P49717 (/IPI) P49717 (/IPI)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 Q382V6 (/IDA)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 Q382V6 (/ISM)
DNA helicase activity GO:0003678
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
1 Q382V6 (/IDA)
Showing 1 to 10 of 11 entries

There are 35 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
DNA replication initiation GO:0006270
The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate.
15 Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS) Q8IDF0 (/ISS)
(5 more)
DNA unwinding involved in DNA replication GO:0006268
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
6 P30664 (/IDA) P30664 (/IDA) P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA)
Double-strand break repair via break-induced replication GO:0000727
The error-free repair of a double-strand break in DNA in which the centromere-proximal end of a broken chromosome searches for a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template, and progresses to the end of the chromosome.
4 P30665 (/IMP) P30665 (/IMP) P30665 (/IMP) P53091 (/IMP)
Pre-replicative complex assembly involved in nuclear cell cycle DNA replication GO:0006267
The aggregation, arrangement and bonding together of a set of components to form the nuclear pre-replicative complex, a protein-DNA complex that forms at the eukaryotic DNA replication origin and is required for replication initiation.
4 P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA)
DNA unwinding involved in DNA replication GO:0006268
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
4 F4KAB8 (/TAS) F4KAB8 (/TAS) Q0WVF5 (/TAS) Q0WVF5 (/TAS)
DNA strand elongation involved in DNA replication GO:0006271
The process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication.
4 P30665 (/IMP) P30665 (/IMP) P30665 (/IMP) P53091 (/IMP)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
3 P33991 (/TAS) Q26454 (/TAS) Q26454 (/TAS)
DNA replication initiation GO:0006270
The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate.
3 P30665 (/IGI) P30665 (/IGI) P30665 (/IGI)
Regulation of DNA-dependent DNA replication initiation GO:0030174
Any process that modulates the frequency, rate or extent of initiation of DNA-dependent DNA replication; the process in which DNA becomes competent to replicate. In eukaryotes, replication competence is established in early G1 and lost during the ensuing S phase.
3 P30664 (/IDA) P30664 (/IDA) Q5XK83 (/IDA)
Nuclear DNA replication GO:0033260
The DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle.
3 P30665 (/IMP) P30665 (/IMP) P30665 (/IMP)
Showing 1 to 10 of 35 entries

There are 27 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
MCM complex GO:0042555
A hexameric protein complex required for the initiation and regulation of DNA replication.
11 P29458 (/IDA) P30664 (/IDA) P30664 (/IDA) P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P33991 (/IDA) P49731 (/IDA) P53091 (/IDA) Q382V6 (/IDA)
(1 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
8 P29458 (/IDA) P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P49731 (/IDA) P53091 (/IDA) Q382V6 (/IDA) Q95XQ8 (/IDA)
MCM core complex GO:0097373
A protein complex that contains Mcm4, Mcm6, and Mcm7 proteins, and possesses DNA helicase activity. In the heterohexameric MCM complex, the Mcm4/6/7 proteins form a stable core, and Mcm2, Mcm3, and Mcm5 are more peripherally associated.
6 P29458 (/IDA) P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P49731 (/IDA) P53091 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
5 P30665 (/TAS) P30665 (/TAS) P30665 (/TAS) P33991 (/TAS) P53091 (/TAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
5 P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA) Q382V6 (/IDA)
MCM complex GO:0042555
A hexameric protein complex required for the initiation and regulation of DNA replication.
5 P49717 (/ISS) P49717 (/ISS) Q6GL41 (/ISS) Q86B14 (/ISS) Q86IF1 (/ISS)
CMG complex GO:0071162
A protein complex that contains the GINS complex, Cdc45p, and the heterohexameric MCM complex, and that is involved in unwinding DNA during replication.
5 P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA) Q382V6 (/IDA)
THO complex GO:0000347
The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1p, Tho2p, Thp1p, and Mft1p, while the human complex is composed of 7 subunits.
4 F4KAB8 (/IDA) F4KAB8 (/IDA) Q0WVF5 (/IDA) Q0WVF5 (/IDA)
Nuclear pre-replicative complex GO:0005656
A protein-DNA complex assembled at eukaryotic DNA replication origins during late mitosis and G1, allowing the origin to become competent, or 'licensed', for replication. The complex normally includes the origin recognition complex (ORC), Cdc6, Cdt1 and the MiniChromosome Maintenance (Mcm2-7) proteins.
4 P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA)
DNA replication preinitiation complex GO:0031261
A protein-DNA complex assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication. The preinitiation complex is formed by the assembly of additional proteins onto an existing prereplicative complex. In budding yeast, the additional proteins might include Cdc45p, Sld2p, Sld3p, Dpb11p, DNA polymerases, and others; in fission yeast the GINS complex is present.
4 P30665 (/IDA) P30665 (/IDA) P30665 (/IDA) P53091 (/IDA)
Showing 1 to 10 of 27 entries
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