The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
DNA Topoisomerase I, domain 2
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: DNA topoisomerase I

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 37 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
DNA topoisomerase type I activity GO:0003917
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
21 P79994 (/ISS) Q07050 (/ISS) Q54RC3 (/ISS) Q7YR26 (/ISS) Q7YR26 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS)
(11 more)
DNA topoisomerase type I activity GO:0003917
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
18 O17966 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P07799 (/IDA) P11387 (/IDA) P11387 (/IDA)
(8 more)
DNA topoisomerase type I activity GO:0003917
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
13 A0A1D8PPI2 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P07799 (/IMP) P11387 (/IMP) P11387 (/IMP)
(3 more)
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
6 P41512 (/ISS) Q04750 (/ISS) Q07050 (/ISS) Q7YR26 (/ISS) Q7YR26 (/ISS) Q9WUL0 (/ISS)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
6 P07799 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) Q9WUL0 (/IDA)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
5 F4K3F4 (/IPI) P11387 (/IPI) P11387 (/IPI) P11387 (/IPI) P11387 (/IPI)
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
4 P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
4 P11387 (/IMP) P11387 (/IMP) P11387 (/IMP) P11387 (/IMP)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
4 P79994 (/ISS) Q07050 (/ISS) Q7YR26 (/ISS) Q7YR26 (/ISS)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
4 P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA)
Showing 1 to 10 of 37 entries

There are 64 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
21 F4K3F4 (/ISS) P79994 (/ISS) Q07050 (/ISS) Q54RC3 (/ISS) Q7YR26 (/ISS) Q7YR26 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS) Q8I3Z9 (/ISS)
(11 more)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
16 P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA)
(6 more)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
15 Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA) Q8I3Z9 (/IDA)
(5 more)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
12 P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P07799 (/IMP) P11387 (/IMP) P11387 (/IMP) P11387 (/IMP)
(2 more)
Regulation of mitotic recombination GO:0000019
Any process that modulates the frequency, rate or extent of DNA recombination during mitosis.
6 P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP)
Chromatin silencing at rDNA GO:0000183
Repression of transcription of ribosomal DNA by altering the structure of chromatin.
6 P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP)
DNA strand elongation involved in DNA replication GO:0006271
The process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication.
6 P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP)
Chromatin assembly or disassembly GO:0006333
The formation or destruction of chromatin structures.
6 P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
6 P41512 (/ISS) Q04750 (/ISS) Q07050 (/ISS) Q7YR26 (/ISS) Q7YR26 (/ISS) Q9WUL0 (/ISS)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
6 P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP) P04786 (/IMP)
Showing 1 to 10 of 64 entries

There are 48 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
22 E5KMK7 (/IDA) E5KMK7 (/IDA) O17966 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P07799 (/IDA)
(12 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
15 Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA) Q8I3Z9 (/RCA)
(5 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
7 O17966 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P30189 (/IDA) Q581U8 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
6 P04786 (/IPI) P04786 (/IPI) P04786 (/IPI) P04786 (/IPI) P04786 (/IPI) P04786 (/IPI)
Replication fork protection complex GO:0031298
A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling.
6 P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA) P04786 (/IDA)
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
5 P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) Q9WUL0 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 P07799 (/HDA) P11387 (/HDA) P11387 (/HDA) P11387 (/HDA) P11387 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 P79994 (/ISS) Q07050 (/ISS) Q54RC3 (/ISS) Q7YR26 (/ISS) Q7YR26 (/ISS)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
5 P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) Q581U8 (/IDA)
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
4 P11387 (/IDA) P11387 (/IDA) P11387 (/IDA) P11387 (/IDA)
Showing 1 to 10 of 48 entries
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