The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Leucine-rich Repeat Variant
".
FunFam 37: CCR4-NOT transcription complex subunit 9
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
123 |
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
Q5PQL2 (/IPI)
(113 more) |
Epidermal growth factor receptor binding GO:0005154
Interacting selectively and non-covalently with the epidermal growth factor receptor.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Kinase binding GO:0019900
Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Epidermal growth factor receptor binding GO:0005154
Interacting selectively and non-covalently with the epidermal growth factor receptor.
|
9 | Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) |
Kinase binding GO:0019900
Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
|
9 | Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) |
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
|
9 | Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) Q92600 (/IPI) |
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
9 | Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) |
There are 16 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of intracellular estrogen receptor signaling pathway GO:0033147
Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway.
|
244 |
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
(234 more) |
Positive regulation of nuclear receptor transcription coactivator activity GO:2000327
Any process that activates or increases the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity.
|
244 |
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
(234 more) |
Cytokine-mediated signaling pathway GO:0019221
A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
|
57 |
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
(47 more) |
Positive regulation of peptidyl-serine phosphorylation GO:0033138
Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Negative regulation of intracellular estrogen receptor signaling pathway GO:0033147
Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Positive regulation of epidermal growth factor receptor signaling pathway GO:0045742
Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Positive regulation of nuclear receptor transcription coactivator activity GO:2000327
Any process that activates or increases the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Nuclear-transcribed mRNA poly(A) tail shortening GO:0000289
Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length.
|
9 | Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) |
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest GO:0006977
A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage and resulting in the stopping or reduction in rate of the cell cycle.
|
9 | Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) |
Sex differentiation GO:0007548
The establishment of the sex of an organism by physical differentiation.
|
9 | Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) |
Positive regulation of peptidyl-serine phosphorylation GO:0033138
Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-serine.
|
9 | Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) |
Negative regulation of intracellular estrogen receptor signaling pathway GO:0033147
Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of an intracellular estrogen receptor signaling pathway.
|
9 | Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) |
Positive regulation of epidermal growth factor receptor signaling pathway GO:0045742
Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
|
9 | Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) Q92600 (/IMP) |
Positive regulation of nuclear receptor transcription coactivator activity GO:2000327
Any process that activates or increases the frequency, rate or extent of ligand-dependent nuclear receptor transcription coactivator activity.
|
9 | Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) |
MRNA catabolic process GO:0006402
The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
|
2 | M9PF85 (/IDA) Q7JVP2 (/IDA) |
Negative regulation of translation GO:0017148
Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
2 | M9PF85 (/IDA) Q7JVP2 (/IDA) |
There are 9 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
CCR4-NOT complex GO:0030014
The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins.
|
244 |
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
(234 more) |
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
|
189 |
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
A7MB47 (/ISS)
(179 more) |
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
|
57 |
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
Q9JKY0 (/IDA)
(47 more) |
CCR4-NOT complex GO:0030014
The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
57 |
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
Q9JKY0 (/ISO)
(47 more) |
CCR4-NOT complex GO:0030014
The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins.
|
11 |
M9PF85 (/IDA)
Q7JVP2 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
Q92600 (/IDA)
(1 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
9 | Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) Q92600 (/TAS) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
9 | Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) Q92600 (/HDA) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
9 | Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) Q92600 (/IDA) |