The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: F-box only protein 44

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
27 Q80UW2 (/IPI) Q80UW2 (/IPI) Q8BK26 (/IPI) Q8NI29 (/IPI) Q8NI29 (/IPI) Q8NI29 (/IPI) Q8NI29 (/IPI) Q8NI29 (/IPI) Q96EF6 (/IPI) Q96EF6 (/IPI)
(17 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
12 Q80UW2 (/IDA) Q80UW2 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q96EF6 (/IDA) Q96EF6 (/IDA) Q96EF6 (/IDA)
(2 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
9 Q3SX24 (/ISS) Q6AY27 (/ISS) Q6DIA9 (/ISS) Q923V4 (/ISS) Q9N0C8 (/ISS) Q9NRD1 (/ISS) Q9NRD1 (/ISS) Q9QZM8 (/ISS) Q9QZM8 (/ISS)
Carbohydrate binding GO:0030246
Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
3 Q80UW2 (/IDA) Q80UW2 (/IDA) Q9QZN4 (/IDA)
Amyloid-beta binding GO:0001540
Interacting selectively and non-covalently with amyloid-beta peptide/protein and/or its precursor.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Ubiquitin-protein transferase activity GO:0004842
Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
1 Q9UK22 (/TAS)

There are 24 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
23 Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q9H4M3 (/TAS)
(13 more)
Post-translational protein modification GO:0043687
The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.
23 Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q9H4M3 (/TAS)
(13 more)
Proteasomal protein catabolic process GO:0010498
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
11 Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA) Q9H4M3 (/IDA)
(1 more)
Proteasomal protein catabolic process GO:0010498
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
11 Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP) Q9H4M3 (/IMP)
(1 more)
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process GO:0031146
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome.
5 Q80UW2 (/IDA) Q80UW2 (/IDA) Q9NRD1 (/IDA) Q9NRD1 (/IDA) Q9QZN4 (/IDA)
Ubiquitin-dependent ERAD pathway GO:0030433
The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
4 Q3SX24 (/ISS) Q923V4 (/ISS) Q9NRD1 (/ISS) Q9NRD1 (/ISS)
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process GO:0031146
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome.
4 Q17QK6 (/ISS) Q3SX24 (/ISS) Q923V4 (/ISS) Q9UK22 (/ISS)
Proteolysis GO:0006508
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
3 Q9NRD1 (/TAS) Q9NRD1 (/TAS) Q9UK22 (/TAS)
Glycoprotein catabolic process GO:0006516
The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.
3 Q80UW2 (/IDA) Q80UW2 (/IDA) Q9QZN4 (/IDA)
DNA damage checkpoint GO:0000077
A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
2 Q9NRD1 (/TAS) Q9NRD1 (/TAS)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
2 Q9NRD1 (/TAS) Q9NRD1 (/TAS)
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Glycoprotein catabolic process GO:0006516
The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.
2 Q17QK6 (/ISS) Q9UK22 (/ISS)
Negative regulation of cell population proliferation GO:0008285
Any process that stops, prevents or reduces the rate or extent of cell proliferation.
2 G3V774 (/IDA) Q9Z1X8 (/IDA)
Negative regulation of cell population proliferation GO:0008285
Any process that stops, prevents or reduces the rate or extent of cell proliferation.
2 Q80UW2 (/ISO) Q80UW2 (/ISO)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
2 Q17QK6 (/ISS) Q9UK22 (/ISS)
Ubiquitin-dependent ERAD pathway GO:0030433
The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Regulation of protein ubiquitination GO:0031396
Any process that modulates the frequency, rate or extent of the addition of ubiquitin groups to a protein.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Cellular protein modification process GO:0006464
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
1 Q9UK22 (/TAS)
Proteasomal protein catabolic process GO:0010498
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
1 Q8BK26 (/ISO)
Ubiquitin-dependent ERAD pathway GO:0030433
The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
1 Q9QZN4 (/IMP)
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process GO:0031146
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome.
1 Q9QZN4 (/ISO)
Ubiquitin-dependent glycoprotein ERAD pathway GO:0097466
An ERAD pathway whereby endoplasmic reticulum (ER)-resident glycoproteins are targeted for degradation. Includes differential processing of the glycoprotein sugar chains, retrotranslocation to the cytosol and degradation by the ubiquitin-proteasome pathway. A glycoprotein is a compound in which a carbohydrate component is covalently bound to a protein component.
1 Q9QZN4 (/IC)

There are 12 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
25 Q80UW2 (/TAS) Q80UW2 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q8NI29 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS) Q96EF6 (/TAS)
(15 more)
SCF ubiquitin ligase complex GO:0019005
A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1).
25 Q80UW2 (/IDA) Q80UW2 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q8NI29 (/IDA) Q96EF6 (/IDA) Q96EF6 (/IDA) Q96EF6 (/IDA)
(15 more)
SCF ubiquitin ligase complex GO:0019005
A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1).
10 Q17QK6 (/ISS) Q3SX24 (/ISS) Q6AY27 (/ISS) Q6DIA9 (/ISS) Q8BK26 (/ISS) Q923V4 (/ISS) Q9N0C8 (/ISS) Q9QZM8 (/ISS) Q9QZM8 (/ISS) Q9UK22 (/ISS)
SCF ubiquitin ligase complex GO:0019005
A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1).
5 Q6DIA9 (/ISO) Q8BK26 (/ISO) Q9QZM8 (/ISO) Q9QZM8 (/ISO) Q9QZN4 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q9NRD1 (/IDA) Q9NRD1 (/IDA) Q9UK22 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q80UW2 (/ISO) Q80UW2 (/ISO) Q9QZN4 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q3SX24 (/ISS) Q923V4 (/ISS) Q9QZN4 (/ISS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q17QK6 (/ISS) Q9UK22 (/ISS)
Dendritic spine GO:0043197
A small, membranous protrusion from a dendrite that forms a postsynaptic compartment - typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable including \thin\, \stubby\, \mushroom\, and \branched\, with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.
2 Q80UW2 (/IDA) Q80UW2 (/IDA)
Dendrite cytoplasm GO:0032839
All of the contents of a dendrite, excluding the surrounding plasma membrane.
1 Q9Z1X8 (/IDA)
Endoplasmic reticulum quality control compartment GO:0044322
A subcompartment of the endoplasmic reticulum in which proteins with improper or incorrect folding accumulate. Enzymes in this compartment direct proteins with major folding problems to translocation to the cytosol and degradation, and proteins with minor folding problems to the ER, to interact with chaperon proteins.
1 Q9QZN4 (/IDA)
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