CATH Superfamily 1.20.120.1710
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: NAD-dependent histone deacetylase SIR2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
NAD-dependent histone deacetylase activity GO:0017136
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from a histone.
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10 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
5 | P06700 (/IPI) P06700 (/IPI) P06700 (/IPI) P06700 (/IPI) P06700 (/IPI) |
NAD-dependent histone deacetylase activity (H3-K14 specific) GO:0032041
Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 14) + H2O = histone H3 L-lysine (position 14) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 14 of the histone H3 protein.
|
5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
NAD-independent histone deacetylase activity GO:0045129
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction does not require the presence of NAD, and represents the removal of an acetyl group from a histone.
|
5 | P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) |
NAD-dependent histone deacetylase activity (H3-K9 specific) GO:0046969
Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 9) + H2O = histone H3 L-lysine (position 9) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 9 of the histone H3 protein.
|
5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
NAD-dependent histone deacetylase activity (H4-K16 specific) GO:0046970
Catalysis of the reaction: histone H4 N6-acetyl-L-lysine (position 16) + H2O = histone H4 L-lysine (position 16) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 16 of the histone H4 protein.
|
5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Histone deacetylase activity GO:0004407
Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.
|
1 | Q6FWI7 (/IDA) |
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin silencing at silent mating-type cassette GO:0030466
Repression of transcription at silent mating-type loci by alteration of the structure of chromatin.
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10 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) |
Chromatin silencing at rDNA GO:0000183
Repression of transcription of ribosomal DNA by altering the structure of chromatin.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Chronological cell aging GO:0001300
The process associated with progression of the cell from its inception to the end of its lifespan that occurs when the cell is in a non-dividing, or quiescent, state.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Replicative cell aging GO:0001302
The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Double-strand break repair via nonhomologous end joining GO:0006303
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
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5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
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5 | P06700 (/IGI) P06700 (/IGI) P06700 (/IGI) P06700 (/IGI) P06700 (/IGI) |
Chromatin assembly or disassembly GO:0006333
The formation or destruction of chromatin structures.
|
5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Chromatin silencing at telomere GO:0006348
Repression of transcription of telomeric DNA by altering the structure of chromatin.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Sister chromatid cohesion GO:0007062
The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other.
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5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Negative regulation of DNA replication GO:0008156
Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Histone deacetylation GO:0016575
The modification of histones by removal of acetyl groups.
|
5 | P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) |
Chromatin silencing at silent mating-type cassette GO:0030466
Repression of transcription at silent mating-type loci by alteration of the structure of chromatin.
|
5 | P53685 (/IGI) P53685 (/IGI) P53685 (/IGI) P53685 (/IGI) P53685 (/IGI) |
Telomere tethering at nuclear periphery GO:0034398
The process in which a telomere is maintained in a specific location at the nuclear periphery.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Negative regulation of DNA recombination GO:0045910
Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination.
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5 | P06700 (/IGI) P06700 (/IGI) P06700 (/IGI) P06700 (/IGI) P06700 (/IGI) |
Negative regulation of DNA recombination GO:0045910
Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination.
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5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Negative regulation of mitotic recombination GO:0045950
Any process that inhibits or decreases the rate of DNA recombination during mitosis.
|
5 | P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) |
Regulation of thiamine biosynthetic process GO:0070623
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of thiamine.
|
5 | P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) P53685 (/IMP) |
Establishment of protein-containing complex localization to telomere GO:0097695
The directed movement of a protein-containing macromolecular complex to a specific location in the telomeric region of a chromosome.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Negative regulation of DNA amplification GO:1904524
Any process that stops, prevents or reduces the frequency, rate or extent of DNA amplification.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
5 | P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) P06700 (/IMP) |
Chromatin silencing complex GO:0005677
Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing.
|
5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Nuclear heterochromatin GO:0005720
A condensed form of chromatin, occurring in the nucleus during interphase, that stains strongly with basophilic dyes. The DNA of heterochromatin is typically replicated at a later stage in the cell-division cycle than euchromatin.
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5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Nuclear telomeric heterochromatin GO:0005724
Heterochromatic regions of the chromosome found at the telomeres of a chromosome in the nucleus.
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5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
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5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
RENT complex GO:0030869
A protein complex that mediates transcriptional silencing at the rDNA locus (the name derives from regulator of nucleolar silencing and telophase). In Saccharomyces the complex contains Net1p, Sir2p, Cdc14p, and at least one more subunit.
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5 | P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) P06700 (/IDA) |
Set3 complex GO:0034967
A histone deacetylase complex that is involved in transcriptional regulation. In S. cerevisiae, this complex consists of Set3p, Snt1p, Hos4p, Sif2p, Cpr1p, Hos2p, and Hst1p.
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5 | P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) P53685 (/IDA) |