CATH Superfamily 1.20.1170.10
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 3: E3 ubiquitin protein ligase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 11 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
P53 binding GO:0002039
Interacting selectively and non-covalently with one of the p53 family of proteins.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
MRNA 3'-UTR binding GO:0003730
Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Ubiquitin-protein transferase activity GO:0004842
Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
11 |
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
(1 more) |
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
|
11 |
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
Q5VTR2 (/IPI)
(1 more) |
Histone binding GO:0042393
Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
P53 binding GO:0002039
Interacting selectively and non-covalently with one of the p53 family of proteins.
|
1 | A2VDP1 (/ISS) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
1 | A2VDP1 (/ISS) |
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
|
1 | A2VDP1 (/ISS) |
Histone binding GO:0042393
Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
|
1 | A2VDP1 (/ISS) |
There are 17 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
11 |
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
(1 more) |
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
|
11 |
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
(1 more) |
Histone monoubiquitination GO:0010390
The modification of histones by addition of a single ubiquitin group.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
|
11 |
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
(1 more) |
Negative regulation of cell migration GO:0030336
Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Histone H2B ubiquitination GO:0033523
The modification of histone H2B by addition of ubiquitin groups.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
11 |
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
(1 more) |
Negative regulation of mRNA polyadenylation GO:1900364
Any process that stops, prevents or reduces the frequency, rate or extent of mRNA polyadenylation.
|
11 |
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
(1 more) |
Positive regulation of histone H2B ubiquitination GO:2001168
Any process that activates or increases the frequency, rate or extent of histone H2B ubiquitination.
|
11 |
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
Q5VTR2 (/IMP)
(1 more) |
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
|
1 | A2VDP1 (/ISS) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | A2VDP1 (/ISS) |
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
|
1 | A2VDP1 (/ISS) |
Histone monoubiquitination GO:0010390
The modification of histones by addition of a single ubiquitin group.
|
1 | A2VDP1 (/ISS) |
Negative regulation of cell migration GO:0030336
Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
|
1 | A2VDP1 (/ISS) |
Histone H2B ubiquitination GO:0033523
The modification of histone H2B by addition of ubiquitin groups.
|
1 | A2VDP1 (/ISS) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | A2VDP1 (/ISS) |
There are 9 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
11 |
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
Q5VTR2 (/TAS)
(1 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
HULC complex GO:0033503
A ubiquitin-conjugating enzyme complex that contains two RING finger proteins, which have ubiquitin ligase activity, in addition to a protein with ubiquitin-conjugating enzyme activity; catalyzes the ubiquitination of histone H2B at lysine 119 (or the equivalent residue). In Schizosaccharomyces the subunits are Rhp1, Brl2/Rfp1 and Brl1/Rfp2.
|
11 |
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
Q5VTR2 (/IDA)
(1 more) |
Ubiquitin ligase complex GO:0000151
A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
|
1 | A2VDP1 (/ISS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | A2VDP1 (/ISS) |
HULC complex GO:0033503
A ubiquitin-conjugating enzyme complex that contains two RING finger proteins, which have ubiquitin ligase activity, in addition to a protein with ubiquitin-conjugating enzyme activity; catalyzes the ubiquitination of histone H2B at lysine 119 (or the equivalent residue). In Schizosaccharomyces the subunits are Rhp1, Brl2/Rfp1 and Brl1/Rfp2.
|
1 | A2VDP1 (/ISS) |