The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: E3 ubiquitin-protein ligase RNF34 isoform X1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 18 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Phosphatidylinositol phosphate binding GO:1901981
Interacting selectively and non-covalently with phosphatidylinositol phosphate.
5 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q99KR6 (/ISS)
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
4 Q6AYH3 (/IDA) Q8WZ73 (/IDA) Q8WZ73 (/IDA) Q969K3 (/IDA)
P53 binding GO:0002039
Interacting selectively and non-covalently with one of the p53 family of proteins.
3 Q8WZ73 (/IPI) Q8WZ73 (/IPI) Q969K3 (/IPI)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
3 Q8WZ73 (/IPI) Q8WZ73 (/IPI) Q969K3 (/IPI)
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
3 Q8WZ73 (/IPI) Q8WZ73 (/IPI) Q969K3 (/IPI)
Protease binding GO:0002020
Interacting selectively and non-covalently with any protease or peptidase.
2 Q8WZ73 (/IPI) Q8WZ73 (/IPI)
P53 binding GO:0002039
Interacting selectively and non-covalently with one of the p53 family of proteins.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Protein kinase binding GO:0019901
Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
2 Q8WZ73 (/IPI) Q8WZ73 (/IPI)
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Protease binding GO:0002020
Interacting selectively and non-covalently with any protease or peptidase.
1 Q6ZQM0 (/ISO)
Ubiquitin-protein transferase activity GO:0004842
Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
1 Q6AYH3 (/IDA)
Ubiquitin-protein transferase activity GO:0004842
Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
1 Q99KR6 (/ISO)
Protein kinase binding GO:0019901
Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
1 Q6ZQM0 (/ISO)
Ubiquitin protein ligase activity GO:0061630
Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
1 Q969K3 (/IMP)
Phosphatidylinositol phosphate binding GO:1901981
Interacting selectively and non-covalently with phosphatidylinositol phosphate.
1 Q969K3 (/IDA)
Phosphatidylinositol phosphate binding GO:1901981
Interacting selectively and non-covalently with phosphatidylinositol phosphate.
1 Q99KR6 (/ISO)

There are 38 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein K48-linked ubiquitination GO:0070936
A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Negative regulation of signal transduction by p53 class mediator GO:1901797
Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction by p53 class mediator.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Negative regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:1902042
Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis GO:2001271
Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in execution phase of apoptosis.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
6 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
6 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
5 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q99KR6 (/ISS)
Nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway GO:0035872
A series of molecular signals generated as a consequence of a nucleotide-binding domain, leucine rich repeat containing receptor (NLR) binding to one of its physiological ligands. NLRs are cytoplasmic receptors defined by their tripartite domain architecture that contains: a variable C-terminus, a middle nucleotide-binding domain, and a LRR domain that is variable in the repeats composition and number. The NLR signaling pathway begins with binding of a ligand to a NLR receptor and ends with regulation of a downstream cellular process.
5 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q99KR6 (/ISS)
Regulation of oxygen metabolic process GO:2000374
Any process that modulates the frequency, rate or extent of oxygen metabolic process.
5 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q969K3 (/ISS)
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
4 Q8WZ73 (/IMP) Q8WZ73 (/IMP) Q969K3 (/IMP) Q99KR6 (/IMP)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
4 Q8WZ73 (/IMP) Q8WZ73 (/IMP) Q969K3 (/IMP) Q99KR6 (/IMP)
Regulation of fibroblast migration GO:0010762
Any process that modulates the rate, frequency or extent of fibroblast cell migration. Fibroblast cell migration is accomplished by extension and retraction of a pseudopodium.
3 Q8CIN9 (/ISS) Q8WZ73 (/ISS) Q8WZ73 (/ISS)
Negative regulation of signal transduction by p53 class mediator GO:1901797
Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction by p53 class mediator.
3 Q8WZ73 (/IMP) Q8WZ73 (/IMP) Q969K3 (/IMP)
Negative regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:1902042
Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
3 Q8WZ73 (/IMP) Q8WZ73 (/IMP) Q969K3 (/IMP)
Negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis GO:2001271
Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in execution phase of apoptosis.
3 Q8WZ73 (/IMP) Q8WZ73 (/IMP) Q969K3 (/IMP)
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
2 Q8WZ73 (/IDA) Q8WZ73 (/IDA)
Ubiquitin-dependent protein catabolic process GO:0006511
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Negative regulation of tumor necrosis factor-mediated signaling pathway GO:0010804
Any process that decreases the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor.
2 Q8WZ73 (/IMP) Q8WZ73 (/IMP)
Negative regulation of tumor necrosis factor-mediated signaling pathway GO:0010804
Any process that decreases the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor.
2 Q6ZQM0 (/ISS) Q8CIN9 (/ISS)
Regulation of TOR signaling GO:0032006
Any process that modulates the frequency, rate or extent of TOR signaling.
2 Q8WZ73 (/IC) Q8WZ73 (/IC)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Protein K48-linked ubiquitination GO:0070936
A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.
2 Q8WZ73 (/IDA) Q8WZ73 (/IDA)
Protein K48-linked ubiquitination GO:0070936
A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Negative regulation of signal transduction by p53 class mediator GO:1901797
Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction by p53 class mediator.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Negative regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:1902042
Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway via death domain receptors.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis GO:2001271
Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in execution phase of apoptosis.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
1 Q6ZQM0 (/IDA)
Regulation of fibroblast migration GO:0010762
Any process that modulates the rate, frequency or extent of fibroblast cell migration. Fibroblast cell migration is accomplished by extension and retraction of a pseudopodium.
1 Q6ZQM0 (/IMP)
Negative regulation of tumor necrosis factor-mediated signaling pathway GO:0010804
Any process that decreases the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor.
1 Q6ZQM0 (/ISO)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
1 Q969K3 (/IDA)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
1 Q969K3 (/IMP)
Protein ubiquitination GO:0016567
The process in which one or more ubiquitin groups are added to a protein.
1 Q99KR6 (/ISO)
Nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway GO:0035872
A series of molecular signals generated as a consequence of a nucleotide-binding domain, leucine rich repeat containing receptor (NLR) binding to one of its physiological ligands. NLRs are cytoplasmic receptors defined by their tripartite domain architecture that contains: a variable C-terminus, a middle nucleotide-binding domain, and a LRR domain that is variable in the repeats composition and number. The NLR signaling pathway begins with binding of a ligand to a NLR receptor and ends with regulation of a downstream cellular process.
1 Q969K3 (/IMP)
Nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway GO:0035872
A series of molecular signals generated as a consequence of a nucleotide-binding domain, leucine rich repeat containing receptor (NLR) binding to one of its physiological ligands. NLRs are cytoplasmic receptors defined by their tripartite domain architecture that contains: a variable C-terminus, a middle nucleotide-binding domain, and a LRR domain that is variable in the repeats composition and number. The NLR signaling pathway begins with binding of a ligand to a NLR receptor and ends with regulation of a downstream cellular process.
1 Q99KR6 (/ISO)
Proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
1 Q969K3 (/IDA)
Cellular response to cold GO:0070417
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
1 Q99KR6 (/IMP)
Protein K48-linked ubiquitination GO:0070936
A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.
1 Q969K3 (/IMP)
Regulation of oxygen metabolic process GO:2000374
Any process that modulates the frequency, rate or extent of oxygen metabolic process.
1 Q99KR6 (/IMP)

There are 19 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
7 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q6ZQM0 (/ISS) Q8CIN9 (/ISS) Q99KR6 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 Q5E9J6 (/ISS) Q5NVC7 (/ISS) Q5NVC7 (/ISS) Q6AYH3 (/ISS) Q99KR6 (/ISS)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
4 G3V504 (/IDA) G3V504 (/IDA) H7BYJ1 (/IDA) Q969K3 (/IDA)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
4 G3V504 (/IDA) G3V504 (/IDA) H7BYJ1 (/IDA) Q969K3 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
3 Q8WZ73 (/TAS) Q8WZ73 (/TAS) Q969K3 (/TAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q8WZ73 (/IDA) Q8WZ73 (/IDA) Q969K3 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
3 Q8WZ73 (/IDA) Q8WZ73 (/IDA) Q969K3 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
2 Q6ZQM0 (/ISO) Q99KR6 (/ISO)
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
2 Q8WZ73 (/IDA) Q8WZ73 (/IDA)
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
2 Q6ZQM0 (/ISS) Q8CIN9 (/ISS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
2 Q8WZ73 (/HDA) Q8WZ73 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q969K3 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q99KR6 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q99KR6 (/ISO)
Endosome membrane GO:0010008
The lipid bilayer surrounding an endosome.
1 Q6ZQM0 (/ISO)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
1 Q99KR6 (/ISO)
Cytoplasmic vesicle GO:0031410
A vesicle found in the cytoplasm of a cell.
1 Q6ZQM0 (/IDA)
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