The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Retinoid X Receptor
".
FunFam 9: estrogen-related receptor gamma isoform X1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 33 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
71 |
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
P62508 (/IPI)
(61 more) |
AF-2 domain binding GO:0050682
Interacting selectively and non-covalently with the AF-2 domain of a protein, a highly conserved ligand-dependent transactivation domain which is essential for receptor-mediated transcriptional activation.
|
70 |
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
(60 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
36 |
O95718 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
P62508 (/ISA)
(26 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
36 |
O95718 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
P62508 (/ISM)
(26 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
36 |
O95718 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
P62508 (/NAS)
(26 more) |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
36 |
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
(26 more) |
RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
|
35 |
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
(25 more) |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
35 |
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
(25 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
35 |
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
(25 more) |
Nuclear receptor activity GO:0004879
Combining with a signal and transmitting the signal to the transcriptional machinery by interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II.
|
35 |
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
(25 more) |
Showing 1 to 10 of 33 entries
There are 55 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
73 |
P11475 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
P62509 (/ISS)
(63 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
72 |
O95718 (/ISS)
P11475 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
(62 more) |
Positive regulation of cold-induced thermogenesis GO:0120162
Any process that activates or increases the frequency, rate or extent of cold-induced thermogenesis.
|
70 |
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
P62508 (/ISS)
(60 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
36 |
O95718 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
P62508 (/IDA)
(26 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
36 |
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
P62509 (/ISO)
(26 more) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
36 |
O95718 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
(26 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
36 |
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
P62509 (/IDA)
(26 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
35 |
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
(25 more) |
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
|
35 |
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
(25 more) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
35 |
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
P62509 (/IMP)
(25 more) |
Showing 1 to 10 of 55 entries
There are 9 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
36 |
O95718 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
P62508 (/TAS)
(26 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
35 |
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
P62509 (/NAS)
(25 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | F6PD98 (/IC) Q6Q6F4 (/IC) Q6Q6F6 (/IC) |
Condensed chromosome GO:0000793
A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.
|
2 | O95718 (/ISS) P11475 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | O95718 (/ISS) P11475 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | O95718 (/ISS) P11475 (/ISS) |
Condensed chromosome GO:0000793
A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct structure.
|
1 | Q61539 (/IMP) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q61539 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q61539 (/IDA) |
Showing 1 to 9 of 9 entries