The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Hypothetical protein; domain 2
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 8: DNA-3-methyladenine glycosylase 2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 2 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Alkylbase DNA N-glycosylase activity GO:0003905
Catalysis of the reaction: DNA with alkylated base + H2O = DNA with abasic site + alkylated base. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar to remove an alkylated base, leaving an apyrimidinic or apurinic site.
10 P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
10 P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI) P04395 (/IPI)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
10 P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA)
Base-excision repair GO:0006284
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
10 P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA)
DNA dealkylation involved in DNA repair GO:0006307
The repair of alkylation damage, e.g. the removal of the alkyl group at the O6-position of guanine by O6-alkylguanine-DNA alkyltransferase (AGT).
10 P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
10 P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP) P04395 (/IMP)
DNA dealkylation involved in DNA repair GO:0006307
The repair of alkylation damage, e.g. the removal of the alkyl group at the O6-position of guanine by O6-alkylguanine-DNA alkyltransferase (AGT).
5 P9WJW3 (/IDA) P9WJW3 (/IDA) P9WJW3 (/IDA) P9WJW3 (/IDA) P9WJW3 (/IDA)
Response to nitrosative stress GO:0051409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
5 P9WJW3 (/IDA) P9WJW3 (/IDA) P9WJW3 (/IDA) P9WJW3 (/IDA) P9WJW3 (/IDA)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
10 P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA) P04395 (/IDA)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
5 P9WJW3 (/HDA) P9WJW3 (/HDA) P9WJW3 (/HDA) P9WJW3 (/HDA) P9WJW3 (/HDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
5 P9WJW3 (/HDA) P9WJW3 (/HDA) P9WJW3 (/HDA) P9WJW3 (/HDA) P9WJW3 (/HDA)
CATH-Gene3D is a Global Biodata Core Resource Learn more...