CATH Superfamily 1.10.287.180
Transcription elongation factor, GreA/GreB, N-terminal domain
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Transcription elongation factor, GreA/GreB, N-terminal domain
".
FunFam 1: Transcription elongation factor GreA
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 1 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Bacterial-type RNA polymerase holo enzyme binding GO:0001108
Interacting selectively and non-covalently with the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase.
|
174 |
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
(164 more) |
There are 8 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Regulation of DNA-templated transcription, elongation GO:0032784
Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
|
211 |
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
(201 more) |
DNA-templated transcription, elongation GO:0006354
The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
|
174 |
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
(164 more) |
DNA-templated transcription, elongation GO:0006354
The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
|
49 |
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
(39 more) |
DNA-templated transcription, initiation GO:0006352
Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
|
37 |
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
P30128 (/IDA)
(27 more) |
Positive regulation of mRNA cleavage GO:0031439
Any process that activates or increases the frequency, rate or extent of mRNA cleavage.
|
37 |
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
P30128 (/IMP)
(27 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
18 |
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
Q71ZH4 (/ISS)
(8 more) |
Response to antibiotic GO:0046677
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
|
14 |
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
P9WMT9 (/IEP)
(4 more) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
1 | Q8E8N1 (/ISS) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
174 |
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
P0A6W5 (/HDA)
(164 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
174 |
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
P0A6W5 (/IDA)
(164 more) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
14 |
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
(4 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
14 |
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
(4 more) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
14 |
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
P9WMT9 (/HDA)
(4 more) |