The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Nop domain
".
FunFam 2: U4/U6 small nuclear ribonucleoprotein Prp31
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
Q8RXN6 (/IPI)
Q8RXN6 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
(7 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
15 |
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
Q8WWY3 (/HDA)
(5 more) |
U4 snRNA binding GO:0030621
Interacting selectively and non-covalently with the U4 small nuclear RNA (U4 snRNA).
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
U4atac snRNA binding GO:0030622
Interacting selectively and non-covalently with the U4atac small nuclear RNA (U4atac snRNA).
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
SnRNP binding GO:0070990
Interacting selectively and non-covalently with any part of a small nuclear ribonucleoprotein particle.
|
15 |
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
Q8WWY3 (/IPI)
(5 more) |
U4atac snRNA binding GO:0030622
Interacting selectively and non-covalently with the U4atac small nuclear RNA (U4atac snRNA).
|
5 | Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q9VUM1 (/ISS) |
U4 snRNA binding GO:0030621
Interacting selectively and non-covalently with the U4 small nuclear RNA (U4 snRNA).
|
1 | Q8CCF0 (/ISO) |
U4atac snRNA binding GO:0030622
Interacting selectively and non-covalently with the U4atac small nuclear RNA (U4atac snRNA).
|
1 | Q8CCF0 (/ISO) |
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
|
1 | Q8CCF0 (/ISO) |
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
|
1 | Q9VUM1 (/ISS) |
SnRNP binding GO:0070990
Interacting selectively and non-covalently with any part of a small nuclear ribonucleoprotein particle.
|
1 | Q8CCF0 (/ISO) |
There are 24 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
16 |
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
(6 more) |
Spliceosomal tri-snRNP complex assembly GO:0000244
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
Spliceosomal tri-snRNP complex assembly GO:0000244
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
|
15 |
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
(5 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
15 |
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
(5 more) |
Ribonucleoprotein complex localization GO:0071166
Any process in which a ribonucleoprotein complex is transported to, or maintained in, a specific location within a cell.
|
15 |
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
Q8WWY3 (/IMP)
(5 more) |
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
9 | C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
9 | C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
7 | C7G068 (/ISS) Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) Q9VUM1 (/ISS) |
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
|
6 | P49704 (/IDA) P49704 (/IDA) P49704 (/IDA) P49704 (/IDA) P49704 (/IDA) P49704 (/IDA) |
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
|
6 | P49704 (/IMP) P49704 (/IMP) P49704 (/IMP) P49704 (/IMP) P49704 (/IMP) P49704 (/IMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
6 | P49704 (/IPI) P49704 (/IPI) P49704 (/IPI) P49704 (/IPI) P49704 (/IPI) P49704 (/IPI) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
2 | Q7SXM7 (/IMP) Q7SXM7 (/IMP) |
Methylation-dependent chromatin silencing GO:0006346
Repression of transcription by methylation of DNA, leading to the formation of heterochromatin.
|
2 | Q8RXN6 (/IMP) Q8RXN6 (/IMP) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
2 | Q8RXN6 (/IMP) Q8RXN6 (/IMP) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
2 | Q8RXN6 (/IMP) Q8RXN6 (/IMP) |
Seed germination GO:0009845
The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
|
2 | Q8RXN6 (/IMP) Q8RXN6 (/IMP) |
Retina development in camera-type eye GO:0060041
The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
|
2 | Q7SXM7 (/IMP) Q7SXM7 (/IMP) |
Cellular response to cold GO:0070417
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
2 | Q8RXN6 (/IMP) Q8RXN6 (/IMP) |
Spliceosomal tri-snRNP complex assembly GO:0000244
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
|
1 | Q8CCF0 (/ISO) |
Spliceosomal tri-snRNP complex assembly GO:0000244
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
|
1 | O42904 (/ISS) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
1 | Q8CCF0 (/ISO) |
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
|
1 | O42904 (/IMP) |
Ribonucleoprotein complex localization GO:0071166
Any process in which a ribonucleoprotein complex is transported to, or maintained in, a specific location within a cell.
|
1 | Q8CCF0 (/ISO) |
There are 28 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
22 |
O42904 (/IDA)
P49704 (/IDA)
P49704 (/IDA)
P49704 (/IDA)
P49704 (/IDA)
P49704 (/IDA)
P49704 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(12 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
20 |
E7EVX8 (/IDA)
E7EVX8 (/IDA)
E7EVX8 (/IDA)
Q8RXN6 (/IDA)
Q8RXN6 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(10 more) |
Cajal body GO:0015030
A class of nuclear body, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA.
|
17 |
Q8RXN6 (/IDA)
Q8RXN6 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(7 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
15 |
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
(5 more) |
U2-type spliceosomal complex GO:0005684
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron that has canonical consensus sequences near the 5' and 3' ends.
|
15 |
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
Q8WWY3 (/IC)
(5 more) |
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
U4atac snRNP GO:0005690
A ribonucleoprotein complex that contains small nuclear RNA U4atac.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
U4atac snRNP GO:0005690
A ribonucleoprotein complex that contains small nuclear RNA U4atac.
|
15 |
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
Q8WWY3 (/TAS)
(5 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
MLL1 complex GO:0071339
A protein complex that can methylate lysine-4 of histone H3. MLL1/MLL is the catalytic methyltransferase subunit, and the complex also contains the core components ASH2L, HCFC1/HCF1 WDR5 and RBBP5.
|
15 |
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
Q8WWY3 (/IDA)
(5 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
10 | C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) C0H4A0 (/ISS) Q9VUM1 (/ISS) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
6 | P49704 (/HDA) P49704 (/HDA) P49704 (/HDA) P49704 (/HDA) P49704 (/HDA) P49704 (/HDA) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
6 | C7G068 (/ISS) Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) |
U4atac snRNP GO:0005690
A ribonucleoprotein complex that contains small nuclear RNA U4atac.
|
5 | Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
5 | Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) |
MLL1 complex GO:0071339
A protein complex that can methylate lysine-4 of histone H3. MLL1/MLL is the catalytic methyltransferase subunit, and the complex also contains the core components ASH2L, HCFC1/HCF1 WDR5 and RBBP5.
|
5 | Q5U5C5 (/ISS) Q6NVP6 (/ISS) Q7SXM7 (/ISS) Q7SXM7 (/ISS) Q8CCF0 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O42904 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q8CCF0 (/ISO) |
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
|
1 | Q8CCF0 (/ISO) |
U4atac snRNP GO:0005690
A ribonucleoprotein complex that contains small nuclear RNA U4atac.
|
1 | Q8CCF0 (/ISO) |
Cajal body GO:0015030
A class of nuclear body, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA.
|
1 | Q8CCF0 (/ISO) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
1 | Q8CCF0 (/ISO) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
1 | Q8CCF0 (/ISO) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
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1 | Q8CCF0 (/ISO) |
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
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1 | Q9VUM1 (/HDA) |
MLL1 complex GO:0071339
A protein complex that can methylate lysine-4 of histone H3. MLL1/MLL is the catalytic methyltransferase subunit, and the complex also contains the core components ASH2L, HCFC1/HCF1 WDR5 and RBBP5.
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1 | Q8CCF0 (/ISO) |