The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Ribosomal protein L39e
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: 60S ribosomal protein-like L39

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 8 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
75 O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(65 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
74 P04650 (/IPI) P04650 (/IPI) P04650 (/IPI) P04650 (/IPI) P04650 (/IPI) P62892 (/IPI) P62892 (/IPI) P62892 (/IPI) P62892 (/IPI) P62892 (/IPI)
(64 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
68 P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS)
(58 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
7 P51424 (/IDA) P51424 (/IDA) P51424 (/IDA) P51424 (/IDA) P51424 (/IDA) Q8L8W6 (/IDA) Q8L8W6 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 P04650 (/IC) P04650 (/IC) P04650 (/IC) P04650 (/IC) P04650 (/IC)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
1 P05767 (/ISO)

There are 20 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
69 P05767 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(59 more)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Innate immune response in mucosa GO:0002227
Any process of the innate immune response that takes place in the mucosal tissues.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Innate immune response in mucosa GO:0002227
Any process of the innate immune response that takes place in the mucosal tissues.
68 P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(58 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
68 P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS) P62891 (/NAS)
(58 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
Antibacterial humoral response GO:0019731
An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Antibacterial humoral response GO:0019731
An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
68 P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(58 more)
Defense response to Gram-positive bacterium GO:0050830
Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Defense response to Gram-positive bacterium GO:0050830
Reactions triggered in response to the presence of a Gram-positive bacterium that act to protect the cell or organism.
68 P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(58 more)
Antimicrobial humoral immune response mediated by antimicrobial peptide GO:0061844
An immune response against microbes mediated by anti-microbial peptides in body fluid.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Antimicrobial humoral immune response mediated by antimicrobial peptide GO:0061844
An immune response against microbes mediated by anti-microbial peptides in body fluid.
68 P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(58 more)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
7 O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
5 P04650 (/IC) P04650 (/IC) P04650 (/IC) P04650 (/IC) P04650 (/IC)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
5 Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM)
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
1 Q96EH5 (/IEP)

There are 13 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
159 C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA) C0H4H3 (/IDA)
(149 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
75 O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) O16130 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(65 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
69 P05767 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(59 more)
Extracellular space GO:0005615
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Extracellular space GO:0005615
That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
68 P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(58 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
68 P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS) P62891 (/TAS)
(58 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
68 P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA) P62891 (/HDA)
(58 more)
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
68 P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA) P62891 (/IDA)
(58 more)
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
68 P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO) P62892 (/ISO)
(58 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
9 Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO) Q4QEQ0 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
5 Q57UJ8 (/IDA) Q57UJ8 (/IDA) Q57UJ8 (/IDA) Q57UJ8 (/IDA) Q57UJ8 (/IDA)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
5 Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM) Q57UJ8 (/ISM)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
1 Q96EH5 (/NAS)
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