The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"5' to 3' exonuclease, C-terminal subdomain
".
FunFam 9: Flap endonuclease 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 34 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
5'-flap endonuclease activity GO:0017108
Catalysis of the cleavage of a 5' flap structure in DNA, but not other DNA structures; processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis.
|
18 |
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
(8 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
P26793 (/IPI)
P26793 (/IPI)
P26793 (/IPI)
P26793 (/IPI)
P26793 (/IPI)
P26793 (/IPI)
P26793 (/IPI)
P39748 (/IPI)
P39748 (/IPI)
P39748 (/IPI)
(7 more) |
5'-3' exonuclease activity GO:0008409
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 5' end.
|
13 |
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
(3 more) |
Flap endonuclease activity GO:0048256
Catalysis of the cleavage of a flap structure in DNA, but not other DNA structures; processes the ends of Okazaki fragments in lagging strand DNA synthesis.
|
11 |
F4K191 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39749 (/IDA)
Q7K734 (/IDA)
Q7K734 (/IDA)
(1 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
6 | P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) P39748 (/IMP) |
Damaged DNA binding GO:0003684
Interacting selectively and non-covalently with damaged DNA.
|
6 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) |
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
|
6 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) |
Endonuclease activity GO:0004519
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
|
6 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) |
RNA-DNA hybrid ribonuclease activity GO:0004523
Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
|
6 | P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) |
Exonuclease activity GO:0004527
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
|
6 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) |
Showing 1 to 10 of 34 entries
There are 33 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA replication, removal of RNA primer GO:0043137
Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease.
|
13 |
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
(3 more) |
Gene conversion at mating-type locus, DNA repair synthesis GO:0000734
Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template during gene conversion at the mating-type locus.
|
7 | P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) |
Replicative cell aging GO:0001302
The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division.
|
7 | P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
7 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) Q9N3T2 (/TAS) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
7 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) Q9N3T2 (/TAS) |
Base-excision repair, base-free sugar-phosphate removal GO:0006286
Excision of the sugar phosphate residue at an AP site, i.e. a deoxyribose sugar with a missing base, by a phosphodiesterase enzyme.
|
7 | P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) |
Base-excision repair, base-free sugar-phosphate removal GO:0006286
Excision of the sugar phosphate residue at an AP site, i.e. a deoxyribose sugar with a missing base, by a phosphodiesterase enzyme.
|
7 | P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) |
Double-strand break repair via nonhomologous end joining GO:0006303
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
|
7 | P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) |
Maintenance of DNA trinucleotide repeats GO:0035753
Any process involved in sustaining the fidelity and copy number of DNA trinucleotide repeats. DNA trinucleotide repeats are naturally occurring runs of three base-pairs.
|
7 | P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) P26793 (/IGI) |
Maintenance of DNA trinucleotide repeats GO:0035753
Any process involved in sustaining the fidelity and copy number of DNA trinucleotide repeats. DNA trinucleotide repeats are naturally occurring runs of three base-pairs.
|
7 | P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) P26793 (/IMP) |
Showing 1 to 10 of 33 entries
There are 18 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
29 |
F4K191 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
(19 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
14 |
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
Q6FHX6 (/IDA)
Q6FHX6 (/IDA)
Q6FHX6 (/IDA)
Q6FHX6 (/IDA)
(4 more) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
13 |
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P26793 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
P39748 (/IDA)
(3 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
8 | P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P26793 (/HDA) P39750 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
8 | F4K191 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) P26793 (/IDA) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
6 | P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
6 | P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) P39748 (/TAS) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
6 | P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) P39748 (/HDA) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
6 | P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) P39748 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q09708 (/ISS) Q54NU0 (/ISS) |
Showing 1 to 10 of 18 entries