The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
5' to 3' exonuclease, C-terminal subdomain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
SC:1DNA repair protein RAD51 homologSC:2DNA-directed RNA polymerase subunit alphaUvrABC system protein CDNA ligaseDNA repair protein RAD51 homologHolliday junction ATP-dependent DNA helicase RuvATranscription termination/antitermination protein NusAHolliday junction ATP-dependent DNA helicase RuvADNA-directed DNA polymerase, family XSC:3DNA excision repair protein ERCC-1DNA polymerase betaDNA repair endonuclease XPF isoform X2Fanconi anemia, complementation group MATP-dependent RNA helicase, putativeSC:4DNA-directed RNA polymeraseSC:5Polymerase (DNA directed), etaDNA polymerase IVDNA repair protein REV1DNA polymerase iotaDNA repair protein REV1DNA polymerase etaSC:6DNA polymerase Iexonuclease 1T5 flap endonucleaseSC:7DNA ligaseFanconi anemia core complex-associated protein 24DNA polymeraseDNA integrity scanning protein DisADNA polymerase IU5 small nuclear ribonucleoprotein helicaseFlap endonuclease 1DNA polymerase lambdaU5 small nuclear ribonucleoprotein kDa helicaseTranscription termination/antitermination protein NusADNA integrity scanning protein DisADNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit alphatranslocation protein SEC63 homologDNA integrity scanning protein DisADNA polymerase gamma, catalytic subunitDNA-directed RNA polymeraseactivating signal cointegrator 1 complex subunit 3Flap endonuclease GEN-like 1DNA-directed RNA polymerasemeiotic recombination protein DMC1/LIM15 homologTfoX family proteinDNA polymerase IDNA polymerase gamma, mitochondrialPolymerase (DNA directed), thetaDNA repair protein complementing XP-G cells homologDNA repair endonuclease UVH1Polymerase (DNA directed) kappaDNA-directed RNA polymerase5'-3' exonuclease family proteinMeiotic recombination protein DMC1 homologDnaJ protein ERDJ2ADNA polymerase V subunitDNA-directed RNA polymerase subunit alphaPlastid replication-repair enzymeDNA repair protein UVH3Endonuclease, putativeDNA repair protein RAD51 homologMating-type switch/DNA repair protein Swi10/Rad10Meiotic recombination protein DMC1RAD2p Single-stranded DNA endonucleaseHelicase, POLQ likeMitochondrial DNA polymerase I protein CDNA polymerase IVDNA polymerase IVDNA repair protein RAD1Bifunctional 3'-5' exonuclease/DNA polymeraseTranscription termination/antitermination protein NusADNA polymerase ADNA polymerase IVExonuclease 1DNA polymerase I, putativeFlap endonuclease 1Pre-mRNA-splicing helicase BRR2, putativeTranslocation protein SEC63DNA-directed RNA polymeraseMeiotic recombination protein DMC1DNA repair endonuclease, putativeDExH-box ATP-dependent RNA helicase DExH17DNA-directed RNA polymerase subunit alphaPutative DNA repair endonucleaseMeiotic recombination protein DMC1Protein translocation complex component (Npl1)DNA-directed RNA polymerase, mitochondrialPutative DNA polymerase 1ERCC1 nucleotide excision repair protein, putativeDNA polymerase ITranslocation protein SEC63Flap endonuclease 1DNA repair protein RadCDNA repair proteinU5 small nuclear ribonucleoprotein helicaseUnplaced genomic scaffold supercont1.20, whole genome shotgun sequenceDNA excision repair protein Rad2DNA polymerase IVExonuclease I, putativePutative DNA polymerase kappaMeiotic recombinase Dmc1RNA polymerase alpha subunit domain proteinDNA ligase BDNA ligaseTranscription termination/antitermination protein NusAUvrABC system protein CDNA-directed RNA polymerase subunit alphaUnplaced genomic scaffold supercont1.24, whole genome shotgun sequenceDNA ligase5'-3' exonucleaseDNA repair endonuclease XPFDNA ligasetRNA-specific adenosine deaminaseProtein CBG20918DNA polymerase IVDNA ligaseDNA polymerase theta, putativeDNA-directed RNA polymeraseDNA ligaseTranslocation protein SEC63flap endonuclease GEN-like 2 isoform X1GM24241DNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit alphaExonuclease, putativeDNA polymerase subunit gamma-1, mitochondrialDNA repair protein RAD51 homologUnplaced genomic scaffold supercont1.238, whole genome shotgun sequenceDNA-directed RNA polymeraseDNA polymerase IV5'-3' exonucleaseUvrABC system protein CExonuclease-1, H3TH domain proteinDNA repair protein RAD51 homologImpB/MucB/SamB family proteinMitochondrial DNA polymerase beta-PAK, putativeDNA ligase BDNApol-iota, isoform ADNA-dependent RNA polymeraseDNA ligaseDNA-directed RNA polymerase subunit alphaHolliday junction ATP-dependent DNA helicase RuvAExonuclease I, putativeDNA excision repair protein, putativeDNA repair endonuclease XPFDNA repair endonuclease xp-f, putativeDNaJ domain (Prokaryotic heat shock protein)Transcription termination/antitermination protein NusAUncharacterized proteinDNA ligasePredicted proteinTranscription termination/antitermination protein NusAUvrABC system protein CUvrABC system protein CPutative DNA repair proteinChromosome 8, whole genome shotgun sequenceFA core complex associated protein 24DNA polymerase lambda subunit5'-3' exonuclease family proteinProbable DNA polymerase X-putativeDNA-directed RNA polymeraseDNA ligaseHolliday junction ATP-dependent DNA helicase RuvADNA-directed RNA polymerase subunit alphaTranscription and mRNA export factor ENY2Mating-type switching protein swi10DNA repair protein Rad1 homologue, putativeUvrABC system protein CUvrABC system protein CMeiotic recombination protein (Dmc1), putative (AFU_orthologue AFUA_7G02200)DNA transformation protein TfoX1ATP-dependent DNA helicase Hel308ATP-dependent DNA helicase Hel308DNA ligase BATP-dependent DNA helicaseDNA-directed RNA polymerase subunit alphaDNA-directed DNA polymerase etaDNA repair enzymeExonuclease I, putativeUncharacterized proteinTranscription termination/antitermination protein NusADNA excision repair protein ERCC-1DNA repair endonuclease XPFYALI0B22242pProtein CBR-ERCC-1Restriction endonuclease type II-like proteinDmc1bDNA-binding protein MutS2Flap structure-specific endonuclease5' flap endonuclease, putativeDNA polymerase IDNA polymerase IVDNA polymerase etaDNA polymerase nuAGAP007361-PADNA polymerase nuDNA-directed RNA polymerase subunit alpha, chloroplasticDNA damage repair protein, putativeDNA polymerase IVNucleotide excision repair proteinFlap endonuclease 1PIN domain-like proteinGH27547pTranscription termination/antitermination protein NusAUvrABC system protein CMeiotic recombination protein DMC1DNA ligaseDNA excision repair protein ERCC-1Rad10pAGAP002805-PADNA repair proteinUncharacterized proteinFanconi anemia core complex-associated protein 24DNA repair protein RAD51 homologDNA repair and recombination protein RadAUncharacterized proteinUvrABC system protein CUvrABC system protein CUncharacterized proteinRNA helicase, activating signal cointegrator 1YALI0F20724pDNA polymerase IUPF0758 protein SPO0054Protein CBR-XPG-1DNA repair protein complementing XP-G cells-like isoform X1DNA polymeraseUncharacterized proteinDNA polymeraseYALI0D12364pDNA polymeraseDNA polymeraseDNA-dependent RNA polymeraseUncharacterized proteinDNA transformation protein tfoXCytosolic Fe-S cluster assembly factor NUBP1 homologUbiquitin carrier protein 7DNA transformation protein TfoX2DNA polymeraseDNA polymerase nuUncharacterized proteinTranslocation protein SEC63-like proteinTranscription termination/antitermination protein NusADNA topoisomerase IUncharacterized proteinDNA polymerase thetaDNA ligaseDNA-directed RNA polymerase subunit alphaDNA polymerase IVDNA polymerase IVDNA polymerase IVYALI0C01573pDNA polymerase IVDNA polymerase IVGEN1 Holliday junction resolvase homologFlap endonuclease 1Flap endonuclease 1Probable DNA-directed RNA polymeraseDNA repair protein, putativeProtein PARTING DANCERS50S ribosomal protein L32eUvrABC system protein CERCC (DNA excision repair protein) homologPredicted proteinPredicted proteinUncharacterized proteinFA core complex-associated protein 24Uncharacterized proteinPredicted proteinUncharacterized proteinUncharacterized proteinMeiotic 9Predicted proteinDNA repair protein rad16ERCC4 domain containing proteinFA core complex associated protein 24FA core complex-associated protein 24Uncharacterized proteinDNA repair protein RAD51 homologUncharacterized proteinUncharacterized proteinUncharacterized proteinMeiotic recombination protein DMC1-like proteinUvrABC system protein CUvrABC system protein CUncharacterized proteinUncharacterized proteinDNA-directed DNA/RNA polymerase muDNA nucleotidylexotransferaseDNA-directed RNA polymeraseDNA-directed RNA polymeraseDNA-directed RNA polymeraseDNA-directed RNA polymeraseDNA polymerase I family proteinUncharacterized proteinPolI-like DNA polymeraseUncharacterized proteinUncharacterized proteinDNA-directed RNA polymerase, mitochondrialDNA repair protein rev1Uncharacterized proteinUncharacterized proteinNADH:ubiquinone oxidoreductase 41 kD complex I subunit1,4-alpha-glucan branching enzyme TK1436DNA polymerase etaDNAJ domain containing proteinUncharacterized proteinUncharacterized proteinDNA topoisomerase 1Uncharacterized proteinDNA polymerase iotaUncharacterized proteinUncharacterized proteinUncharacterized proteinPredicted proteinPredicted proteinPredicted proteinDNA-directed RNA polymerase subunit alphaDNA polymerase IVDNA polymerase IVUncharacterized proteinUncharacterized proteinUncharacterized proteinPredicted proteinUncharacterized proteinXp-G/rad2 DNA repair endonuclease, putativeUncharacterized proteinRAD51 recombinaseUncharacterized proteinDNA-directed RNA polymeraseUncharacterized proteinUncharacterized proteinUvrABC system protein C
« Back to all FunFams

FunFam 22: translocation protein SEC63 homolog

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
8 Q9UGP8 (/HDA) Q9UGP8 (/HDA) Q9UGP8 (/HDA) Q9UGP8 (/HDA) Q9UGP8 (/HDA) Q9UGP8 (/HDA) Q9UGP8 (/HDA) Q9UGP8 (/HDA)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
8 Q9UGP8 (/IPI) Q9UGP8 (/IPI) Q9UGP8 (/IPI) Q9UGP8 (/IPI) Q9UGP8 (/IPI) Q9UGP8 (/IPI) Q9UGP8 (/IPI) Q9UGP8 (/IPI)
Signaling receptor activity GO:0038023
Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
8 Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS)
Showing 1 to 3 of 3 entries

There are 14 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
9 Q8VHE0 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP)
Posttranslational protein targeting to endoplasmic reticulum membrane GO:0006620
The targeting of proteins to a membrane that occurs after their translation. Some secretory proteins exhibit posttranslational transport into the endoplasmic reticulum (ER) lumen: they are synthesized in their entirety on free cytosolic ribosomes and then released into the cytosol, where they are bound by chaperones which keep them in an unfolded state, and subsequently are translocated across the ER membrane.
9 Q8VHE0 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP)
Protein targeting to membrane GO:0006612
The process of directing proteins towards a membrane, usually using signals contained within the protein.
8 Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS)
Posttranslational protein targeting to membrane, translocation GO:0031204
The process in which a protein translocates through the ER membrane posttranslationally.
8 Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP) Q9UGP8 (/IMP)
Liver development GO:0001889
The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
3 F1QGI2 (/IMP) Q6DGY6 (/IMP) Q8VHE0 (/IMP)
Endoplasmic reticulum unfolded protein response GO:0030968
The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation.
2 F1QGI2 (/IMP) Q6DGY6 (/IMP)
Posttranslational protein targeting to membrane, translocation GO:0031204
The process in which a protein translocates through the ER membrane posttranslationally.
2 Q5R660 (/ISS) Q8VHE0 (/ISS)
Myelination GO:0042552
The process in which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier.
2 F1QGI2 (/IMP) Q6DGY6 (/IMP)
Liver development GO:0001889
The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.
1 Q8VHE0 (/IGI)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
1 Q8VHE0 (/ISO)
Showing 1 to 10 of 14 entries

There are 8 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
16 A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) A0A0S2Z5M1 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA)
(6 more)
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
8 Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS)
Endoplasmic reticulum membrane GO:0005789
The lipid bilayer surrounding the endoplasmic reticulum.
8 Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
8 Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS) Q9UGP8 (/TAS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
8 Q9UGP8 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA) Q9UGP8 (/IDA)
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
1 Q8VHE0 (/ISO)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
1 Q8VHE0 (/ISO)
Fusome GO:0045169
A large intracellular spectrin-rich structure that has been found in insect germline cells and mammalian hematopoietic cells. The fusome is an elongated, branched structure, formed from the spherical spectrosome organelle.
1 Q9VS57 (/IDA)
Showing 1 to 8 of 8 entries
CATH-Gene3D is a Global Biodata Core Resource Learn more...