The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: Gag polyprotein
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 10 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
12 |
P03347 (/IPI)
P03348 (/IPI)
P03348 (/IPI)
P04585 (/IPI)
P04591 (/IPI)
P04591 (/IPI)
P04591 (/IPI)
P35963 (/IPI)
Q72497 (/IPI)
Q77YG1 (/IPI)
(2 more) |
|
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
10 | P03347 (/IPI) P04585 (/IPI) Q71B31 (/IPI) Q71B31 (/IPI) Q71B31 (/IPI) Q71B31 (/IPI) Q71B31 (/IPI) Q71B31 (/IPI) Q71B31 (/IPI) Q79791 (/IPI) |
|
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
2 | P04585 (/IDA) P05888 (/IDA) |
|
TRNA binding GO:0000049
Interacting selectively and non-covalently with transfer RNA.
|
1 | P05888 (/IDA) |
|
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
|
1 | P12497 (/IMP) |
|
RNA-directed DNA polymerase activity GO:0003964
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time.
|
1 | P03366 (/IDA) |
|
Peptidase activity GO:0008233
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
|
1 | P04585 (/TAS) |
|
Integrase activity GO:0008907
Catalysis of the integration of one segment of DNA into another.
|
1 | P04585 (/TAS) |
|
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
1 | P12497 (/IMP) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | P05888 (/IDA) |
There are 14 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
RNA-dependent DNA biosynthetic process GO:0006278
A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Viral life cycle GO:0019058
A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Uncoating of virus GO:0019061
The process by which an incoming virus is disassembled in the host cell to release a replication-competent viral genome.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Fusion of virus membrane with host plasma membrane GO:0019064
Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Virion assembly GO:0019068
A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Entry into host cell GO:0030260
The invasion by an organism of a cell of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Nuclear transport GO:0051169
The directed movement of substances into, out of, or within the nucleus.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Establishment of integrated proviral latency GO:0075713
A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.
|
4 | P04585 (/TAS) P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
ATP biosynthetic process GO:0006754
The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
|
3 | Q77YG1 (/IMP) Q77YG1 (/IMP) Q77YG1 (/IMP) |
|
Viral protein processing GO:0019082
Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
|
3 | P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
|
Viral budding via host ESCRT complex GO:0039702
Viral budding which uses a host ESCRT protein complex, or complexes, to mediate the budding process.
|
3 | P04591 (/IDA) P04591 (/IDA) P04591 (/IDA) |
|
Positive regulation of fructose 1,6-bisphosphate 1-phosphatase activity GO:0060550
Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
|
3 | Q77YG1 (/IDA) Q77YG1 (/IDA) Q77YG1 (/IDA) |
|
Positive regulation of calcidiol 1-monooxygenase activity GO:0060559
Any process that increases the rate, frequency or extent of calcidiol 1-monooxygenase activity. Calcidiol 1-monooxygenase activity is the catalysis of the reaction: calcidiol + NADPH + H+ + O2 = calcitriol + NADP+ + H2O.
|
3 | Q77YG1 (/IMP) Q77YG1 (/IMP) Q77YG1 (/IMP) |
|
Intracellular transport of virus GO:0075733
The directed movement of a virus, or part of a virus, within the host cell.
|
3 | P04591 (/TAS) P04591 (/TAS) P04591 (/TAS) |
There are 0 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
