The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Homeodomain-like
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 41: insulin gene enhancer protein ISL-1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 35 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
169 G5EC36 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI)
(159 more)
Promoter-specific chromatin binding GO:1990841
Interacting selectively and non-covalently with a section of chromatin that is associated with gene promoter sequences of DNA.
162 P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS)
(152 more)
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
108 P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA)
(98 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
58 P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA)
(48 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
58 P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA) P61371 (/ISA)
(48 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
58 P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM) P61371 (/ISM)
(48 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
58 P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS)
(48 more)
RNA polymerase II activating transcription factor binding GO:0001102
Interacting selectively and non-covalently with an RNA polymerase II transcription activating factor, a protein involved in positive regulation of transcription.
58 P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI) P61371 (/IPI)
(48 more)
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
54 P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA) P61374 (/IDA)
(44 more)
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
54 P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO)
(44 more)
Showing 1 to 10 of 35 entries

There are 156 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Heart development GO:0007507
The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
164 P50211 (/ISS) P53405 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS)
(154 more)
Positive regulation of cell differentiation GO:0045597
Any process that activates or increases the frequency, rate or extent of cell differentiation.
162 P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS)
(152 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
112 P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA)
(102 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
110 P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI) P61371 (/IGI)
(100 more)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
110 P50211 (/ISS) P53405 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS) P61371 (/ISS)
(100 more)
Heart development GO:0007507
The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
58 P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP)
(48 more)
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
58 P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP)
(48 more)
Neuron fate specification GO:0048665
The process in which a cell becomes capable of differentiating autonomously into a neuron in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed.
57 P53405 (/IMP) P53406 (/IMP) P53406 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP) P61372 (/IMP)
(47 more)
Spinal cord motor neuron cell fate specification GO:0021520
The process in which a cell becomes capable of differentiating autonomously into a motor neuron in an environment that is neutral with respect to the developmental pathway.
56 P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI)
(46 more)
Visceral motor neuron differentiation GO:0021524
The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of visceral motor neurons. Visceral motor neurons innervate glandular targets and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.
56 P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI) P61372 (/IGI)
(46 more)
Showing 1 to 10 of 156 entries

There are 10 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
117 G5EC36 (/IDA) P50211 (/IDA) P53405 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA) P61372 (/IDA)
(107 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
59 D6RBJ1 (/IDA) D6RBJ1 (/IDA) D6RBJ1 (/IDA) D6RBJ1 (/IDA) D6RBJ1 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA) P61371 (/IDA)
(49 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
54 P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO)
(44 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
54 P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS) P61373 (/ISS)
(44 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
54 P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS)
(44 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
54 P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO) P61372 (/ISO)
(44 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
54 P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS) P61372 (/TAS)
(44 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
54 P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS) P61371 (/NAS)
(44 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 Q96A47 (/IC) Q96A47 (/IC) Q96A47 (/IC) Q96A47 (/IC)
Cell GO:0005623
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
2 P50211 (/IDA) P53410 (/IDA)
Showing 1 to 10 of 10 entries
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