The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Homeodomain-like
".
FunFam 286: Homeobox transcription factor
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
|
10 | P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) Q04116 (/IDA) Q04116 (/IDA) |
|
RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
|
10 | P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) Q04116 (/IMP) Q04116 (/IMP) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
8 | P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) |
There are 3 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Negative regulation of transcription involved in G1/S transition of mitotic cell cycle GO:0071930
Any process that stop, prevents or decreases transcription as part of the G1/S transition of the mitotic cell cycle.
|
10 | P34161 (/IGI) P34161 (/IGI) P34161 (/IGI) P34161 (/IGI) P34161 (/IGI) P34161 (/IGI) P34161 (/IGI) P34161 (/IGI) Q04116 (/IGI) Q04116 (/IGI) |
|
Negative regulation of transcription involved in G1/S transition of mitotic cell cycle GO:0071930
Any process that stop, prevents or decreases transcription as part of the G1/S transition of the mitotic cell cycle.
|
8 | P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) P34161 (/IMP) |
|
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
2 | Q04116 (/IMP) Q04116 (/IMP) |
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
10 | P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) Q04116 (/IDA) Q04116 (/IDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
8 | P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
8 | P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) P34161 (/IDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
8 | P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) P34161 (/HDA) |
