The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Ribosomal protein L11, C-terminal domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: 60S ribosomal protein L12

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 10 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
24 P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI) P30050 (/IPI)
(14 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
20 P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA)
(10 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
20 P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC)
(10 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
20 P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS)
(10 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
7 P50883 (/IDA) P50883 (/IDA) Q9FF52 (/IDA) Q9FF52 (/IDA) Q9LFH5 (/IDA) Q9LFH5 (/IDA) Q9LFH5 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 Q9W1B9 (/HDA) Q9W1B9 (/HDA) Q9W1B9 (/HDA) Q9W1B9 (/HDA) Q9W1B9 (/HDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS)
Large ribosomal subunit rRNA binding GO:0070180
Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
3 P35979 (/ISO) P35979 (/ISO) P35979 (/ISO)
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
2 P50883 (/IDA) P50883 (/IDA)
Large ribosomal subunit rRNA binding GO:0070180
Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
2 P23358 (/IDA) P23358 (/IDA)

There are 13 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
25 P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC) P0CX53 (/IC)
(15 more)
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
20 P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP) P0CX53 (/IMP)
(10 more)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
20 P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS)
(10 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
20 P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS) P30050 (/NAS)
(10 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
20 P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS)
(10 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
20 P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS)
(10 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
20 P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS)
(10 more)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
5 Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS)
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
4 P0CT83 (/ISO) P0CT83 (/ISO) P0CT84 (/ISO) P0CT84 (/ISO)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
4 P0CT83 (/ISO) P0CT83 (/ISO) P0CT84 (/ISO) P0CT84 (/ISO)
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
3 P61866 (/IDA) P61866 (/IDA) P61866 (/IDA)
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
2 P50883 (/IEP) P50883 (/IEP)
Positive regulation of translational elongation GO:0045901
Any process that activates or increases the frequency, rate or extent of translational elongation.
2 P23358 (/IDA) P23358 (/IDA)

There are 23 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
29 P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA) P0CX53 (/IDA)
(19 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
20 P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS) P30050 (/TAS)
(10 more)
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
20 P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA)
(10 more)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
20 P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP) P30050 (/EXP)
(10 more)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
20 P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA) P30050 (/IDA)
(10 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
20 P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA)
(10 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
20 P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA)
(10 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
20 P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA) P30050 (/HDA)
(10 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
7 P0CT83 (/ISO) P0CT83 (/ISO) P0CT84 (/ISO) P0CT84 (/ISO) P35979 (/ISO) P35979 (/ISO) P35979 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 P35979 (/IDA) P35979 (/IDA) P35979 (/IDA) P50883 (/IDA) P50883 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
5 P35979 (/IDA) P35979 (/IDA) P35979 (/IDA) P50883 (/IDA) P50883 (/IDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
5 Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS) Q9W1B9 (/TAS)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
5 Q9W1B9 (/HDA) Q9W1B9 (/HDA) Q9W1B9 (/HDA) Q9W1B9 (/HDA) Q9W1B9 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
4 P0CT83 (/HDA) P0CT83 (/HDA) P0CT84 (/HDA) P0CT84 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
4 P50883 (/IDA) P50883 (/IDA) Q9FF52 (/IDA) Q9FF52 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 P35979 (/IDA) P35979 (/IDA) P35979 (/IDA)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
3 P35979 (/ISO) P35979 (/ISO) P35979 (/ISO)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
3 Q9LFH5 (/IDA) Q9LFH5 (/IDA) Q9LFH5 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
2 P0CT83 (/HDA) P0CT83 (/HDA)
Vacuole GO:0005773
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
2 P50883 (/IDA) P50883 (/IDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
2 P50883 (/IDA) P50883 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 P50883 (/IDA) P50883 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
2 P50883 (/IDA) P50883 (/IDA)
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