The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"RNA polymerase II, clamp domain
".
FunFam 1: DNA-directed RNA polymerase subunit beta
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
141 |
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
P0A8T7 (/IPI)
(131 more) |
|
DNA-directed 5'-3' RNA polymerase activity GO:0003899
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
|
15 |
Q5HVY8 (/ISS)
Q5HVY8 (/ISS)
Q5HVY8 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q9KV29 (/ISS)
Q9KV29 (/ISS)
(5 more) |
There are 1 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
15 |
Q5HVY8 (/ISS)
Q5HVY8 (/ISS)
Q5HVY8 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q724E9 (/ISS)
Q9KV29 (/ISS)
Q9KV29 (/ISS)
(5 more) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
129 |
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
(119 more) |
|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
129 |
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
P0A8T7 (/IDA)
(119 more) |
|
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
129 |
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
P0A8T7 (/HDA)
(119 more) |
|
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
6 | P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) |
|
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
6 | P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) P9WGY7 (/HDA) |
