The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Zinc finger, CCHC-type
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 43: Air1p

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
9 P40507 (/IPI) P40507 (/IPI) P40507 (/IPI) Q12476 (/IPI) Q12476 (/IPI) Q12476 (/IPI) Q12476 (/IPI) Q12476 (/IPI) Q12476 (/IPI)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
6 Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA)
Protein binding, bridging GO:0030674
The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
6 Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP)

There are 8 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
NcRNA polyadenylation GO:0043629
The enzymatic addition of a sequence of adenylyl residues at the 3' end of a non-coding RNA (ncRNA) molecule. In eukaryotes, substrates include nuclear non-coding RNAs such as precursors and a variety of incorrectly processed forms of snRNAs, snoRNAs, rRNAs, and tRNAs, as well as discarded RNA fragments which have been removed from ncRNA primary transcripts. Polyadenylation of precursors is often linked to termination of transcription, but polyadenylation of RNAs targeted for degradation may also occur post-transcriptionally. This polyadenylation is important both for 3'-end processing to produce mature ncRNA species and also for targeting incorrectly processed or discarded RNA molecules for degradation.
9 P40507 (/IDA) P40507 (/IDA) P40507 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA)
Nuclear mRNA surveillance of mRNA 3'-end processing GO:0071031
The set of processes involved in identifying and degrading mRNAs with incorrectly formed 3'-ends within the nucleus.
9 P40507 (/IGI) P40507 (/IGI) P40507 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI)
Nuclear polyadenylation-dependent rRNA catabolic process GO:0071035
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, including RNA fragments released as part of processing the primary transcript into multiple mature rRNA species, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA.
9 P40507 (/IGI) P40507 (/IGI) P40507 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI)
Nuclear polyadenylation-dependent snoRNA catabolic process GO:0071036
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a small nucleolar RNA (snoRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target snoRNA.
9 P40507 (/IGI) P40507 (/IGI) P40507 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI)
Nuclear polyadenylation-dependent snRNA catabolic process GO:0071037
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a small nuclear RNA (snRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target snRNA.
9 P40507 (/IGI) P40507 (/IGI) P40507 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI)
Nuclear polyadenylation-dependent tRNA catabolic process GO:0071038
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of an aberrant or incorrectly modified transfer RNA (tRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target tRNA.
9 P40507 (/IDA) P40507 (/IDA) P40507 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA)
Nuclear polyadenylation-dependent CUT catabolic process GO:0071039
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a cryptic unstable transcript (CUT), initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target CUT.
9 P40507 (/IGI) P40507 (/IGI) P40507 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI) Q12476 (/IGI)
TRNA modification GO:0006400
The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
6 Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP) Q12476 (/IMP)

There are 2 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
9 P40507 (/IDA) P40507 (/IDA) P40507 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA)
TRAMP complex GO:0031499
A multiprotein complex having distributive polyadenylation activity of a variety of RNA substrates including hypomodified and incorrectly folded tRNAs, pre-snRNAs, pre-snoRNAs, incorrectly spliced or processed pre-mRNAs, cryptic unstable transcripts (CUTs), pre-rRNAs and rRNA fragments released as part of rRNA processing. In S. cerevisiae, the complex consists of either Pap2 (also known as Trf4) or Trf5, Air1 or Air2, and Mtr4, and is involved in RNA 3'-end processing and in RNA surveillance and quality control.
9 P40507 (/IDA) P40507 (/IDA) P40507 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA) Q12476 (/IDA)
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