The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
E3-binding domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 4: Nucleoid-associated protein Lsr2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 2 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
13 P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA)
(3 more)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
1 Q853W0 (/IDA)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
13 P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP)
(3 more)
Pathogenesis GO:0009405
The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
13 P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP)
(3 more)
Response to iron ion GO:0010039
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
13 P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP) P9WIP7 (/IEP)
(3 more)
DNA protection GO:0042262
Any process in which DNA is protected from damage by, for example, oxidative stress.
13 P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA)
(3 more)
Response to hydrogen peroxide GO:0042542
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
13 P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA) P9WIP7 (/IDA)
(3 more)
Cellular response to oxygen levels GO:0071453
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen.
13 P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP) P9WIP7 (/IMP)
(3 more)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
13 P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA)
(3 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
13 P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA)
(3 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
13 P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA) P9WIP7 (/HDA)
(3 more)
CATH-Gene3D is a Global Biodata Core Resource Learn more...