View in Gene3D

CATH Superfamily 4.10.1060.10

Zinc finger, RanBP2-type

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Zinc finger, RanBP2-type
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 4: Zinc finger Ran-binding domain-containing protein ...

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
 15 O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS)
(5 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
 15 O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA) O95218 (/HDA)
(5 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
 15 O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS)
(5 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
 15 O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI) O95218 (/IPI)
(5 more)
Lipopolysaccharide binding GO:0001530
Interacting selectively and non-covalently with lipopolysaccharide.
 2 E7F1Q7 (/IDA) Q7SZF0 (/IDA)
Lipid antigen binding GO:0030882
Interacting selectively and non-covalently with a lipid antigen.
 2 E7F1Q7 (/IDA) Q7SZF0 (/IDA)

There are 2 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
 15 O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS)
(5 more)
Defense response to bacterium GO:0042742
Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
 2 E7F1Q7 (/IDA) Q7SZF0 (/IDA)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
 18 O35986 (/IDA) O35986 (/IDA) O35986 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA)
(8 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
 15 O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS) O95218 (/TAS)
(5 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
 15 O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA) O95218 (/IDA)
(5 more)