The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Zinc finger, RanBP2-type
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: E3 SUMO-protein ligase RanBP2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
24 A0A0B4K7J2 (/IPI) A0A0B4K7J2 (/IPI) D4A054 (/IPI) D4A054 (/IPI) D4A054 (/IPI) D4A054 (/IPI) D4A054 (/IPI) M0R3M4 (/IPI) M0R3M4 (/IPI) M0R3M4 (/IPI)
(14 more)
SUMO transferase activity GO:0019789
Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages.
11 P49792 (/EXP) P49792 (/EXP) P49792 (/EXP) P49792 (/EXP) P49792 (/EXP) P49792 (/EXP) P49792 (/EXP) Q9ERU9 (/EXP) Q9ERU9 (/EXP) Q9ERU9 (/EXP)
(1 more)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
10 D4A054 (/IPI) D4A054 (/IPI) D4A054 (/IPI) D4A054 (/IPI) D4A054 (/IPI) M0R3M4 (/IPI) M0R3M4 (/IPI) M0R3M4 (/IPI) M0R3M4 (/IPI) M0R3M4 (/IPI)
Ran GTPase binding GO:0008536
Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
7 P49792 (/IPI) P49792 (/IPI) P49792 (/IPI) P49792 (/IPI) P49792 (/IPI) P49792 (/IPI) P49792 (/IPI)
Structural constituent of nuclear pore GO:0017056
The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Chromatin DNA binding GO:0031490
Interacting selectively and non-covalently with DNA that is assembled into chromatin.
3 Q9VXE6 (/IDA) Q9VXE6 (/IDA) Q9VXE6 (/IDA)

There are 35 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
NLS-bearing protein import into nucleus GO:0006607
The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear envelope.
12 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) Q9VXE6 (/IMP)
(2 more)
Response to amphetamine GO:0001975
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine.
10 D4A054 (/IEP) D4A054 (/IEP) D4A054 (/IEP) D4A054 (/IEP) D4A054 (/IEP) M0R3M4 (/IEP) M0R3M4 (/IEP) M0R3M4 (/IEP) M0R3M4 (/IEP) M0R3M4 (/IEP)
Regulation of glycolytic process GO:0006110
Any process that modulates the frequency, rate or extent of glycolysis.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
TRNA export from nucleus GO:0006409
The directed movement of tRNA from the nucleus to the cytoplasm.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Viral process GO:0016032
A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Protein sumoylation GO:0016925
The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
7 P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA)
Protein sumoylation GO:0016925
The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Centrosome localization GO:0051642
Any process in which a centrosome is transported to, and/or maintained in, a specific location within the cell.
7 P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP) P49792 (/IMP)
Regulation of gene silencing by miRNA GO:0060964
Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: RNA (often mRNA) cleavage or mRNA translational repression.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Intracellular transport of virus GO:0075733
The directed movement of a virus, or part of a virus, within the host cell.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Regulation of cellular response to heat GO:1900034
Any process that modulates the frequency, rate or extent of cellular response to heat.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Protein import into nucleus GO:0006606
The directed movement of a protein from the cytoplasm to the nucleus.
5 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Regulation of gluconeogenesis GO:0006111
Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
4 Q9ERU9 (/IMP) Q9ERU9 (/IMP) Q9ERU9 (/IMP) Q9ERU9 (/IMP)
Protein sumoylation GO:0016925
The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
4 Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
Positive regulation of glucokinase activity GO:0033133
Any process that activates or increases the frequency, rate or extent of glucokinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a glucose molecule.
4 Q9ERU9 (/IDA) Q9ERU9 (/IDA) Q9ERU9 (/IDA) Q9ERU9 (/IDA)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Nuclear pore organization GO:0006999
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear pore.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Dosage compensation GO:0007549
Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)
Germ cell development GO:0007281
The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Ventral cord development GO:0007419
The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms.
2 A0A0B4K7J2 (/HMP) A0A0B4K7J2 (/HMP)
Positive regulation of cell population proliferation GO:0008284
Any process that activates or increases the rate or extent of cell proliferation.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Regulation of transposition GO:0010528
Any process that modulates the frequency, rate or extent of transposition. Transposition results in the movement of discrete segments of DNA between nonhomologous sites.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
PiRNA metabolic process GO:0034587
The chemical reactions and pathways involving piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Juvenile hormone mediated signaling pathway GO:0035626
A series of molecular signals initiated by the binding of juvenile hormone to a receptor, and ending with regulation of cell state or activity.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Positive regulation of RNA export from nucleus GO:0046833
Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Positive regulation of protein localization to nucleus GO:1900182
Any process that activates or increases the frequency, rate or extent of protein localization to nucleus.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Regulation of cellular protein localization GO:1903827
Any process that modulates the frequency, rate or extent of cellular protein localization. Cellular protein localization is any process in which a protein is transported to, and/or maintained in, a specific location and encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
2 A0A0B4K7J2 (/IMP) A0A0B4K7J2 (/IMP)
Nucleus organization GO:0006997
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus.
1 Q86G90 (/IMP)
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
1 Q86G90 (/IMP)

There are 22 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear pore GO:0005643
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
19 D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA)
(9 more)
Nuclear pore cytoplasmic filaments GO:0044614
Filamentous extensions on cytoplasmic face of the nuclear pore complex (NPC). In S. cerevisiae, Nup159p, Nup82p, and Nup42p contribute to the cytoplasmic filaments. In vertebrates, Nup358 is a major component.
17 D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA)
(7 more)
Nuclear envelope GO:0005635
The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
11 H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
(1 more)
Nuclear envelope GO:0005635
The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
11 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) Q9ERU9 (/TAS) Q9ERU9 (/TAS) Q9ERU9 (/TAS)
(1 more)
Annulate lamellae GO:0005642
Stacks of endoplasmic reticulum (ER) membranes containing a high density of nuclear pores, thought to form from excess nuclear membrane components, that have been described in a number of different cells. Annulate lamellar membranes are continuous with and embedded within the ER.
11 H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
(1 more)
Nuclear pore GO:0005643
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
11 H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) H2QII6 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
(1 more)
Nuclear envelope GO:0005635
The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
10 P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) Q9VXE6 (/IDA) Q9VXE6 (/IDA) Q9VXE6 (/IDA)
Cytoplasmic periphery of the nuclear pore complex GO:1990723
Cytoplasm situated in close proximity to a nuclear pore complex.
10 D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) D4A054 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA) M0R3M4 (/IDA)
Annulate lamellae GO:0005642
Stacks of endoplasmic reticulum (ER) membranes containing a high density of nuclear pores, thought to form from excess nuclear membrane components, that have been described in a number of different cells. Annulate lamellar membranes are continuous with and embedded within the ER.
7 P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
7 P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS) P49792 (/TAS)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
7 P49792 (/HDA) P49792 (/HDA) P49792 (/HDA) P49792 (/HDA) P49792 (/HDA) P49792 (/HDA) P49792 (/HDA)
Nuclear membrane GO:0031965
Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
7 P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA)
Nuclear inclusion body GO:0042405
An intranuclear focus at which aggregated proteins have been sequestered.
7 P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA)
Nuclear pore nuclear basket GO:0044615
A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component.
7 P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA) P49792 (/IDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
4 Q9ERU9 (/IDA) Q9ERU9 (/IDA) Q9ERU9 (/IDA) Q9ERU9 (/IDA)
Nuclear membrane GO:0031965
Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
4 Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
Nuclear inclusion body GO:0042405
An intranuclear focus at which aggregated proteins have been sequestered.
4 Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
Nuclear pore nuclear basket GO:0044615
A filamentous, cage-like assembly on the nuclear face of the nuclear pore complex (NPC). In S. cerevisiae, Mlp1p and Mlp2p are two major components of the NPC nuclear basket. In vertebrates, Tpr is a major component.
4 Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS) Q9ERU9 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q9VXE6 (/IDA) Q9VXE6 (/IDA) Q9VXE6 (/IDA)
Nuclear euchromatin GO:0005719
The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin.
3 Q9VXE6 (/IDA) Q9VXE6 (/IDA) Q9VXE6 (/IDA)
Nuclear periphery GO:0034399
The portion of the nuclear lumen proximal to the inner nuclear membrane.
3 Q9VXE6 (/IDA) Q9VXE6 (/IDA) Q9VXE6 (/IDA)
Nuclear pore central transport channel GO:0044613
The central substructure of the nuclear pore complex (NPC), through which nucleocytoplasmic transport of RNAs, proteins and small molecules occurs. The central transport channel is filled with FG-nucleoporins, which form a selective barrier and provide a series of binding sites for transporter proteins. Characterized S. cerevisiae FG-nucleoporins include Nup159p, Nup145Np, Nup116p, Nup100p, Nsp1p, Nup57p, Nup49p, Nup42p, Nup53p, Nup59p/Asm4p, Nup60p and Nup1. Characterized vertebrate FG-nucleoporins include Nup214, Nup98, Nup62, Nup54, Nup58/45, NLP1, and Nup153.
3 Q9VXE6 (/IMP) Q9VXE6 (/IMP) Q9VXE6 (/IMP)