The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"UDP-galactose 4-epimerase, domain 1
".
FunFam 5: GDP-mannose 4,6 dehydratase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 10 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
GDP-mannose 4,6-dehydratase activity GO:0008446
Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
|
18 |
B5XE59 (/ISS)
F1RX12 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W683 (/ISS)
F6Z8R0 (/ISS)
F7EWI9 (/ISS)
(8 more) |
NADP+ binding GO:0070401
Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
|
17 |
B5XE59 (/ISS)
F1RX12 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W683 (/ISS)
F6Z8R0 (/ISS)
F7EWI9 (/ISS)
(7 more) |
GDP-mannose 4,6-dehydratase activity GO:0008446
Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
|
8 | O45583 (/IDA) O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) Q18801 (/IDA) Q9VMW9 (/IDA) Q9VMW9 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
4 | O60547 (/IPI) O60547 (/IPI) O60547 (/IPI) O60547 (/IPI) |
GDP-mannose 4,6-dehydratase activity GO:0008446
Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
|
4 | O60547 (/IGI) O60547 (/IGI) O60547 (/IGI) O60547 (/IGI) |
GDP-mannose 4,6-dehydratase activity GO:0008446
Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
|
4 | O60547 (/TAS) O60547 (/TAS) O60547 (/TAS) O60547 (/TAS) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
4 | O60547 (/IPI) O60547 (/IPI) O60547 (/IPI) O60547 (/IPI) |
NADP+ binding GO:0070401
Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
|
4 | O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) |
Fucosyltransferase activity GO:0008417
Catalysis of the transfer of a fucosyl group to an acceptor molecule, typically another carbohydrate or a lipid.
|
3 | A7BI56 (/IMP) F1QPT3 (/IMP) Q1LVF8 (/IMP) |
GDP-mannose 4,6-dehydratase activity GO:0008446
Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
|
2 | Q9VMW9 (/IMP) Q9VMW9 (/IMP) |
There are 17 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Notch signaling pathway GO:0007219
A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
|
20 |
B5XE59 (/ISS)
F1RX12 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W683 (/ISS)
F6Z8R0 (/ISS)
F7EWI9 (/ISS)
(10 more) |
'de novo' GDP-L-fucose biosynthetic process GO:0042351
The chemical reactions and pathways resulting in the formation of GDP-L-fucose from GDP-D-mannose via GDP-4-dehydro-6-deoxy-D-mannose, requiring the functions of GDP-mannose 4,6-dehydratase (EC:4.2.1.47) and GDP-L-fucose synthase (EC:1.1.1.271).
|
18 |
B5XE59 (/ISS)
F1RX12 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W683 (/ISS)
F6Z8R0 (/ISS)
F7EWI9 (/ISS)
(8 more) |
GDP-mannose metabolic process GO:0019673
The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate.
|
17 |
B5XE59 (/ISS)
F1RX12 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W0W9 (/ISS)
F6W683 (/ISS)
F6Z8R0 (/ISS)
F7EWI9 (/ISS)
(7 more) |
GDP-mannose metabolic process GO:0019673
The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate.
|
6 | O45583 (/IDA) O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) Q18801 (/IDA) |
GDP-mannose metabolic process GO:0019673
The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate.
|
4 | O60547 (/IGI) O60547 (/IGI) O60547 (/IGI) O60547 (/IGI) |
GDP-L-fucose biosynthetic process GO:0042350
The chemical reactions and pathways resulting in the formation of GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate.
|
4 | O45583 (/IDA) Q18801 (/IDA) Q9VMW9 (/IDA) Q9VMW9 (/IDA) |
'de novo' GDP-L-fucose biosynthetic process GO:0042351
The chemical reactions and pathways resulting in the formation of GDP-L-fucose from GDP-D-mannose via GDP-4-dehydro-6-deoxy-D-mannose, requiring the functions of GDP-mannose 4,6-dehydratase (EC:4.2.1.47) and GDP-L-fucose synthase (EC:1.1.1.271).
|
4 | O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) O60547 (/IDA) |
Notch signaling pathway GO:0007219
A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
|
3 | A7BI56 (/IMP) F1QPT3 (/IMP) Q1LVF8 (/IMP) |
Retina layer formation GO:0010842
The process in which the vertebrate retina is organized into three laminae: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia.
|
3 | A7BI56 (/IMP) F1QPT3 (/IMP) Q1LVF8 (/IMP) |
Vagus nerve development GO:0021564
The process whose specific outcome is the progression of the vagus nerve over time, from its formation to the mature structure. This nerve is primarily sensory but also has visceromotor components. It originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components. It controls some motor functions such as speech. The sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis.
|
3 | A7BI56 (/IMP) F1QPT3 (/IMP) Q1LVF8 (/IMP) |
Dorsal motor nucleus of vagus nerve development GO:0021744
The process whose specific outcome is the progression of the dorsal motor nucleus of the vagus nerve over time, from its formation to the mature structure.
|
3 | A7BI56 (/IMP) F1QPT3 (/IMP) Q1LVF8 (/IMP) |
'de novo' GDP-L-fucose biosynthetic process GO:0042351
The chemical reactions and pathways resulting in the formation of GDP-L-fucose from GDP-D-mannose via GDP-4-dehydro-6-deoxy-D-mannose, requiring the functions of GDP-mannose 4,6-dehydratase (EC:4.2.1.47) and GDP-L-fucose synthase (EC:1.1.1.271).
|
2 | Q9VMW9 (/IMP) Q9VMW9 (/IMP) |
Positive regulation of Notch signaling pathway GO:0045747
Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.
|
2 | Q9VMW9 (/IMP) Q9VMW9 (/IMP) |
Oogenesis GO:0048477
The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster.
|
2 | Q9VMW9 (/IMP) Q9VMW9 (/IMP) |
Regulation of stem cell division GO:2000035
Any process that modulates the frequency, rate or extent of stem cell division.
|
2 | Q9VMW9 (/IMP) Q9VMW9 (/IMP) |
Response to toxic substance GO:0009636
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
|
1 | Q18801 (/IMP) |
Endoplasmic reticulum unfolded protein response GO:0030968
The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation.
|
1 | Q18801 (/HEP) |
There are 6 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | O60547 (/IC) O60547 (/IC) O60547 (/IC) O60547 (/IC) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
4 | O60547 (/TAS) O60547 (/TAS) O60547 (/TAS) O60547 (/TAS) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
4 | O60547 (/HDA) O60547 (/HDA) O60547 (/HDA) O60547 (/HDA) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
1 | Q18801 (/HDA) |
Sarcomere GO:0030017
The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
|
1 | Q18801 (/HDA) |
Striated muscle dense body GO:0055120
A vinculin-containing myofibril attachment structure of striated muscle that connects sarcomeres to the extracellular matrix. In nematode body wall muscle, the dense body performs the dual role of Z-disk and costamere.
|
1 | Q18801 (/HDA) |