The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Topoisomerase II, domain 5
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 1: DNA gyrase subunit A

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
160 P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI)
(150 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
158 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(148 more)
DNA supercoiling activity GO:0034335
Catalytic introduction of supercoils in a DNA molecule or region thereof. In bacteria, negative supercoils are only introduced by DNA gyrase, a type II topoisomerase, but not all DNA gyrases are capable of introducing supercoils. In bacteria, the level of supercoiling varies widely between species and has been characterized properly in only a handful of organisms. The best characterized enzyme, from E.coli, is exceptionally proficient at supercoiling and this ability is not representative of all bacteria.
88 A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) A0A0G2Q9F8 (/IDA) C5C7X9 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(78 more)
DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0003918
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
83 C5C7X9 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(73 more)
DNA-dependent ATPase activity GO:0008094
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
72 P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI) P0AES4 (/IPI)
(62 more)
DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0003918
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
25 Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS) Q8I0X3 (/ISS)
(15 more)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
14 P9WG47 (/IDA) P9WG47 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA)
(4 more)
DNA topoisomerase activity GO:0003916
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
6 Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
2 P9WG47 (/IDA) P9WG47 (/IDA)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
2 P9WG47 (/IDA) P9WG47 (/IDA)

There are 12 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
108 P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA)
(98 more)
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
86 P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA)
(76 more)
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
86 P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP)
(76 more)
Sister chromatid cohesion GO:0007062
The cell cycle process in which the sister chromatids of a replicated chromosome become tethered to each other.
86 P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP) P0AFI2 (/IMP)
(76 more)
Plasmid partitioning GO:0030541
Any process in which plasmids are segregated or distributed into daughter cells upon cell division.
86 P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA)
(76 more)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
72 P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP)
(62 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
72 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(62 more)
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
72 P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP)
(62 more)
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
72 P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP) P0AES4 (/IMP)
(62 more)
DNA topological change GO:0006265
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
13 Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
(3 more)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
7 Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS)
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
7 Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS)

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
158 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(148 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
158 P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA) P0AES4 (/IDA)
(148 more)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
86 P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA)
(76 more)
Extrinsic component of plasma membrane GO:0019897
The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
86 P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA) P0AFI2 (/IDA)
(76 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
72 P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA)
(62 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
72 P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA) P0AES4 (/HDA)
(62 more)
Apicoplast GO:0020011
The plastid organelle found in apicomplexans.
12 Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA) Q8I0X3 (/IDA)
(2 more)
DNA topoisomerase IV complex GO:0009340
A heterodimeric enzyme, which in most bacterial species is composed of two subunits, ParC and ParE. Functions in chromosome segregation and can relax supercoiled DNA.
8 Q9HUK1 (/IDA) Q9HUK1 (/IDA) Q9HUK1 (/IDA) Q9HUK1 (/IDA) Q9HUK1 (/IDA) Q9HUK1 (/IDA) Q9HUK1 (/IDA) Q9HUK1 (/IDA)
DNA topoisomerase IV complex GO:0009340
A heterodimeric enzyme, which in most bacterial species is composed of two subunits, ParC and ParE. Functions in chromosome segregation and can relax supercoiled DNA.
7 Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS) Q9KPE0 (/ISS)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
6 Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS) Q9KSJ8 (/ISS)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
2 P9WG47 (/HDA) P9WG47 (/HDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
2 P9WG47 (/HDA) P9WG47 (/HDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
Mediator complex GO:0016592
A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
Chloroplast nucleoid GO:0042644
The region of a chloroplast to which the DNA is confined.
2 Q9CAF6 (/IDA) Q9CAF6 (/IDA)
DNA topoisomerase complex (ATP-hydrolyzing) GO:0009330
Complex that possesses DNA topoisomerase (ATP-hydrolyzing) activity.
1 O67108 (/IPI)
CATH-Gene3D is a Global Biodata Core Resource Learn more...