The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"SLED domain
".
FunFam 3: Scm polycomb group protein-like 2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
9 | B1AVB1 (/IPI) B1AVB2 (/IPI) B1AVB3 (/IPI) B1AVB4 (/IPI) B1AVB5 (/IPI) E9Q796 (/IPI) Q8BYC8 (/IPI) Q99MW4 (/IPI) Q9UQR0 (/IPI) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q9UQR0 (/TAS) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
1 | Q9UQR0 (/TAS) |
There are 4 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Apoptotic process GO:0006915
A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
|
8 | B1AVB1 (/IMP) B1AVB2 (/IMP) B1AVB3 (/IMP) B1AVB4 (/IMP) B1AVB5 (/IMP) E9Q796 (/IMP) Q8BYC8 (/IMP) Q99MW4 (/IMP) |
Cellular protein localization GO:0034613
Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
|
8 | B1AVB1 (/IMP) B1AVB2 (/IMP) B1AVB3 (/IMP) B1AVB4 (/IMP) B1AVB5 (/IMP) E9Q796 (/IMP) Q8BYC8 (/IMP) Q99MW4 (/IMP) |
Histone H2A-K119 monoubiquitination GO:0036353
The modification of histone H2A by addition of a single ubiquitin group to lysine-119 (H2A- K119) in metazoans, and at the equivalent residue in other organisms.
|
8 | B1AVB1 (/IMP) B1AVB2 (/IMP) B1AVB3 (/IMP) B1AVB4 (/IMP) B1AVB5 (/IMP) E9Q796 (/IMP) Q8BYC8 (/IMP) Q99MW4 (/IMP) |
Anatomical structure morphogenesis GO:0009653
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
|
1 | Q9UQR0 (/TAS) |
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | B1AVB1 (/IDA) B1AVB2 (/IDA) B1AVB3 (/IDA) B1AVB4 (/IDA) B1AVB5 (/IDA) E9Q796 (/IDA) Q8BYC8 (/IDA) Q99MW4 (/IDA) Q9UQR0 (/IDA) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
8 | B1AVB1 (/IDA) B1AVB2 (/IDA) B1AVB3 (/IDA) B1AVB4 (/IDA) B1AVB5 (/IDA) E9Q796 (/IDA) Q8BYC8 (/IDA) Q99MW4 (/IDA) |
XY body GO:0001741
A structure found in a male mammalian spermatocyte containing an unpaired X chromosome that has become densely heterochromatic, silenced and localized at the nuclear periphery.
|
8 | B1AVB1 (/IDA) B1AVB2 (/IDA) B1AVB3 (/IDA) B1AVB4 (/IDA) B1AVB5 (/IDA) E9Q796 (/IDA) Q8BYC8 (/IDA) Q99MW4 (/IDA) |
PcG protein complex GO:0031519
A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure.
|
1 | Q9UQR0 (/IDA) |