The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: 60S acidic ribosomal protein P0
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 20 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
15 |
O04204 (/IPI)
P05317 (/IPI)
P05317 (/IPI)
P05317 (/IPI)
P05388 (/IPI)
P05388 (/IPI)
P05388 (/IPI)
P05388 (/IPI)
P05388 (/IPI)
P05388 (/IPI)
(5 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
14 |
O04204 (/IDA)
P05317 (/IDA)
P05317 (/IDA)
P05317 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
(4 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
14 |
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
(4 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
7 | P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
7 | P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | O74864 (/ISO) P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | O24573 (/TAS) P19889 (/TAS) P19889 (/TAS) |
Peptide binding GO:0042277
Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Large ribosomal subunit rRNA binding GO:0070180
Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
|
3 | P05317 (/IDA) P05317 (/IDA) P05317 (/IDA) |
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
|
2 | P19889 (/IDA) P19889 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | P19889 (/HDA) P19889 (/HDA) |
DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906
Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
|
2 | P19889 (/IDA) P19889 (/IDA) |
Endonuclease activity GO:0004519
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
|
2 | P19889 (/IDA) P19889 (/IDA) |
Copper ion binding GO:0005507
Interacting selectively and non-covalently with copper (Cu) ions.
|
2 | Q42112 (/IDA) Q42112 (/IDA) |
Calcium ion binding GO:0005509
Interacting selectively and non-covalently with calcium ions (Ca2+).
|
2 | P19889 (/IDA) P19889 (/IDA) |
Class II DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0052720
Catalysis of the hydrolysis of ester linkages immediately 5' to an apurinic/apyrimidinic (AP; also called abasic) site within a deoxyribonucleic acid molecule by creating internal breaks, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.
|
2 | P19889 (/IDA) P19889 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
1 | Q386V3 (/ISM) |
Peptide binding GO:0042277
Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
|
1 | P19945 (/IDA) |
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
|
1 | O24573 (/IDA) |
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
|
1 | Q386V3 (/IPI) |
There are 28 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
14 |
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
(4 more) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
7 | P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
7 | P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) P05388 (/NAS) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
7 | P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
7 | P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
7 | P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) |
Interleukin-12-mediated signaling pathway GO:0035722
A series of molecular signals initiated by the binding of interleukin-12 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
|
7 | P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) |
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
3 | P05317 (/IMP) P05317 (/IMP) P05317 (/IMP) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
3 | P05317 (/IMP) P05317 (/IMP) P05317 (/IMP) |
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
|
3 | P57691 (/IEP) Q42112 (/IEP) Q42112 (/IEP) |
Cellular response to interleukin-4 GO:0071353
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-4 stimulus.
|
3 | P14869 (/IDA) P14869 (/IDA) P14869 (/IDA) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | P19889 (/IC) P19889 (/IC) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | P19889 (/TAS) P19889 (/TAS) |
Base-excision repair GO:0006284
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
|
2 | P19889 (/IDA) P19889 (/IDA) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
2 | Q42112 (/IEP) Q42112 (/IEP) |
Response to cytokinin GO:0009735
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
|
2 | Q42112 (/IDA) Q42112 (/IDA) |
Response to zinc ion GO:0010043
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
|
2 | Q42112 (/IEP) Q42112 (/IEP) |
Response to cadmium ion GO:0046686
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
|
2 | Q42112 (/IEP) Q42112 (/IEP) |
Nucleic acid phosphodiester bond hydrolysis GO:0090305
The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
|
2 | P19889 (/IDA) P19889 (/IDA) |
Cytoplasmic translational elongation GO:0002182
The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in the cytoplasm.
|
1 | O74864 (/ISO) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
1 | Q386V3 (/ISM) |
Lactation GO:0007595
The regulated release of milk from the mammary glands and the period of time that a mother lactates to feed her young.
|
1 | P19945 (/IEP) |
Response to selenium ion GO:0010269
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion.
|
1 | P19945 (/IEP) |
Response to anoxia GO:0034059
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%.
|
1 | O24573 (/IDA) |
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
|
1 | Q9PV90 (/IMP) |
Cellular response to cAMP GO:0071320
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
|
1 | P19945 (/IEP) |
Cellular response to Thyroid stimulating hormone GO:1904401
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroid stimulating hormone stimulus.
|
1 | P19945 (/IEP) |
Cellular response to phorbol 13-acetate 12-myristate GO:1904628
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phorbol 13-acetate 12-myristate stimulus.
|
1 | P19945 (/IEP) |
There are 55 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
24 |
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
F8VU65 (/IDA)
F8VU65 (/IDA)
F8VU65 (/IDA)
(14 more) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
20 |
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
A0A024RBS2 (/IDA)
F8VU65 (/IDA)
F8VU65 (/IDA)
F8VU65 (/IDA)
(10 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
14 |
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
Q8II61 (/ISS)
(4 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
11 |
P05317 (/IDA)
P05317 (/IDA)
P05317 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
(1 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
11 |
O24573 (/IDA)
P05317 (/IDA)
P05317 (/IDA)
P05317 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
P05388 (/IDA)
(1 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) Q42112 (/IDA) Q42112 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | P14869 (/ISS) P14869 (/ISS) P14869 (/ISS) P19945 (/ISS) Q29214 (/ISS) Q29214 (/ISS) Q95140 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
7 | P14869 (/ISS) P14869 (/ISS) P14869 (/ISS) P19945 (/ISS) Q29214 (/ISS) Q29214 (/ISS) Q95140 (/ISS) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
7 | P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) P05388 (/TAS) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
7 | P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
7 | P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
7 | P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
7 | P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
7 | P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) |
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
|
7 | P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
7 | P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) P05388 (/HDA) |
Postsynapse GO:0098794
The part of a synapse that is part of the post-synaptic cell.
|
7 | P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) P05388 (/EXP) |
Postsynapse GO:0098794
The part of a synapse that is part of the post-synaptic cell.
|
7 | P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
7 | P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) P05388 (/IDA) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
7 | P14869 (/ISS) P14869 (/ISS) P14869 (/ISS) P19945 (/ISS) Q29214 (/ISS) Q29214 (/ISS) Q95140 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | E9ADB9 (/ISO) P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
4 | O74864 (/ISO) P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
4 | O04204 (/IDA) P57691 (/IDA) Q42112 (/IDA) Q42112 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
|
3 | P14869 (/IDA) P14869 (/IDA) P14869 (/IDA) |
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
|
3 | P05317 (/HDA) P05317 (/HDA) P05317 (/HDA) |
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
3 | P57691 (/IDA) Q42112 (/IDA) Q42112 (/IDA) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Postsynapse GO:0098794
The part of a synapse that is part of the post-synaptic cell.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
3 | P14869 (/ISO) P14869 (/ISO) P14869 (/ISO) |
Cell GO:0005623
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
|
2 | B5DGC7 (/IDA) B5XDP1 (/IDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | P19889 (/IDA) P19889 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | Q42112 (/IDA) Q42112 (/IDA) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
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2 | P19889 (/IDA) P19889 (/IDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
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2 | Q42112 (/IDA) Q42112 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
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2 | Q42112 (/IDA) Q42112 (/IDA) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
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2 | Q42112 (/IDA) Q42112 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
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2 | P19945 (/IDA) P57691 (/IDA) |
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
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2 | P19889 (/IDA) P19889 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
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2 | P19889 (/TAS) P19889 (/TAS) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
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2 | P19889 (/HDA) P19889 (/HDA) |
Apoplast GO:0048046
The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
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2 | Q42112 (/IDA) Q42112 (/IDA) |
Lipid droplet GO:0005811
An intracellular non-membrane-bounded organelle comprising a matrix of coalesced lipids surrounded by a phospholipid monolayer. May include associated proteins.
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1 | P22685 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
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1 | O74864 (/HDA) |
Large ribosomal subunit GO:0015934
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
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1 | Q386V3 (/ISM) |
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
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1 | O74864 (/ISO) |
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
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1 | P22685 (/HDA) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
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1 | P19945 (/EXP) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
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1 | P19945 (/IDA) |
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
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1 | P22685 (/HDA) |