The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"FAD/NAD(P)-binding domain
".
FunFam 5: Rab GDP dissociation inhibitor
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Rab GDP-dissociation inhibitor activity GO:0005093
Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.
|
25 |
O97555 (/ISS)
P21856 (/ISS)
P21856 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P50396 (/ISS)
(15 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
21 |
P31150 (/IPI)
P31150 (/IPI)
P31150 (/IPI)
P31150 (/IPI)
P31150 (/IPI)
P31150 (/IPI)
P39958 (/IPI)
P39958 (/IPI)
P39958 (/IPI)
P39958 (/IPI)
(11 more) |
Rab GDP-dissociation inhibitor activity GO:0005093
Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.
|
14 |
P21856 (/IDA)
P21856 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
P39958 (/IDA)
(4 more) |
GDP-dissociation inhibitor activity GO:0005092
Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding.
|
6 | P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
3 | P50395 (/HDA) P50395 (/HDA) P50395 (/HDA) |
Rab GDP-dissociation inhibitor activity GO:0005093
Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.
|
3 | P50396 (/ISO) Q61598 (/ISO) Q61598 (/ISO) |
Rab GDP-dissociation inhibitor activity GO:0005093
Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.
|
3 | P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
GDP-dissociation inhibitor activity GO:0005092
Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding.
|
2 | Q24349 (/IDA) Q9VLB7 (/IDA) |
Rab GDP-dissociation inhibitor activity GO:0005093
Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.
|
2 | O24653 (/IGI) O24653 (/IGI) |
Rab GTPase binding GO:0017137
Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases.
|
2 | P50398 (/IPI) P50398 (/IPI) |
Small GTPase binding GO:0031267
Interacting selectively and non-covalently with a small monomeric GTPase.
|
2 | P50399 (/IDA) P50399 (/IDA) |
Small GTPase binding GO:0031267
Interacting selectively and non-covalently with a small monomeric GTPase.
|
2 | Q61598 (/ISO) Q61598 (/ISO) |
Rab GTPase binding GO:0017137
Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases.
|
1 | P50396 (/ISO) |
There are 21 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
|
25 |
O97555 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P50396 (/ISS)
P50398 (/ISS)
P50398 (/ISS)
(15 more) |
Negative regulation of axonogenesis GO:0050771
Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
|
25 |
O97555 (/ISS)
P21856 (/ISS)
P21856 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P31150 (/ISS)
P50396 (/ISS)
(15 more) |
Negative regulation of protein targeting to membrane GO:0090315
Any process that decreases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
|
19 |
O97555 (/ISS)
P50396 (/ISS)
P50398 (/ISS)
P50398 (/ISS)
P60028 (/ISS)
P60028 (/ISS)
P60028 (/ISS)
P60028 (/ISS)
P60028 (/ISS)
P60028 (/ISS)
(9 more) |
Signal transduction GO:0007165
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
|
9 | P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Regulation of small GTPase mediated signal transduction GO:0051056
Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
|
9 | P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P31150 (/TAS) P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
|
8 | P39958 (/IMP) P39958 (/IMP) P39958 (/IMP) P39958 (/IMP) P39958 (/IMP) P39958 (/IMP) P39958 (/IMP) P39958 (/IMP) |
Negative regulation of protein targeting to membrane GO:0090315
Any process that decreases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
|
8 | P21856 (/IMP) P21856 (/IMP) P31150 (/IMP) P31150 (/IMP) P31150 (/IMP) P31150 (/IMP) P31150 (/IMP) P31150 (/IMP) |
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
|
3 | P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Small GTPase mediated signal transduction GO:0007264
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
|
2 | Q61598 (/IPI) Q61598 (/IPI) |
Neurotransmitter secretion GO:0007269
The regulated release of neurotransmitter from the presynapse into the synaptic cleft via calcium-regulated exocytosis during synaptic transmission.
|
2 | Q24349 (/NAS) Q9VLB7 (/NAS) |
Protein transport GO:0015031
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
|
2 | P50399 (/TAS) P50399 (/TAS) |
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
|
2 | P50399 (/IEP) P50399 (/IEP) |
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
|
2 | Q24349 (/NAS) Q9VLB7 (/NAS) |
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
|
2 | P21856 (/IMP) P21856 (/IMP) |
Positive regulation of axon extension GO:0045773
Any process that activates or increases the frequency, rate or extent of axon extension.
|
2 | P50398 (/IMP) P50398 (/IMP) |
Negative regulation of axonogenesis GO:0050771
Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Response to calcium ion GO:0051592
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Positive regulation of axon extension GO:0045773
Any process that activates or increases the frequency, rate or extent of axon extension.
|
1 | P50396 (/ISO) |
Negative regulation of axonogenesis GO:0050771
Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
|
1 | P50396 (/ISO) |
Response to calcium ion GO:0051592
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
|
1 | P50396 (/ISO) |
Negative regulation of protein targeting to membrane GO:0090315
Any process that decreases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
|
1 | P50396 (/ISO) |
There are 33 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
11 |
P31150 (/TAS)
P31150 (/TAS)
P31150 (/TAS)
P31150 (/TAS)
P31150 (/TAS)
P31150 (/TAS)
P50395 (/TAS)
P50395 (/TAS)
P50395 (/TAS)
P50399 (/TAS)
(1 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
6 | P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
6 | O24653 (/IDA) O24653 (/IDA) P21856 (/IDA) P21856 (/IDA) Q96254 (/IDA) Q96254 (/IDA) |
Midbody GO:0030496
A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
|
6 | P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) P31150 (/IDA) |
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
|
3 | P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
3 | P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
3 | P50395 (/HDA) P50395 (/HDA) P50395 (/HDA) |
Vesicle GO:0031982
Any small, fluid-filled, spherical organelle enclosed by membrane.
|
3 | P50395 (/HDA) P50395 (/HDA) P50395 (/HDA) |
Secretory granule lumen GO:0034774
The volume enclosed by the membrane of a secretory granule.
|
3 | P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Azurophil granule lumen GO:0035578
The volume enclosed by the membrane of an azurophil granule, a primary lysosomal granule found in neutrophil granulocytes that contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
|
3 | P50395 (/TAS) P50395 (/TAS) P50395 (/TAS) |
Myelin sheath GO:0043209
An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
|
3 | P50396 (/HDA) Q61598 (/HDA) Q61598 (/HDA) |
Apoplast GO:0048046
The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
|
3 | O24653 (/IDA) O24653 (/IDA) Q9LXC0 (/IDA) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
3 | P50395 (/HDA) P50395 (/HDA) P50395 (/HDA) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
2 | Q61598 (/IPI) Q61598 (/IPI) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | Q24349 (/HDA) Q9VLB7 (/HDA) |
Synaptic vesicle GO:0008021
A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.
|
2 | Q24349 (/NAS) Q9VLB7 (/NAS) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
2 | O24653 (/IDA) O24653 (/IDA) |
Axon GO:0030424
The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Myelin sheath GO:0043209
An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
|
2 | P50398 (/IDA) P50398 (/IDA) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
2 | P50399 (/EXP) P50399 (/EXP) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
2 | P50399 (/IDA) P50399 (/IDA) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
2 | Q61598 (/ISO) Q61598 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | P50396 (/ISO) |
Axon GO:0030424
The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
|
1 | P50396 (/ISO) |
Midbody GO:0030496
A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
|
1 | P50396 (/ISO) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
1 | P50396 (/ISO) |
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
|
1 | P50396 (/ISO) |
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
|
1 | P50396 (/ISO) |
Myelin sheath GO:0043209
An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
|
1 | P50396 (/ISO) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
1 | B5X1S6 (/IDA) |