The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 3: Elongator complex protein 3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 8 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Phosphorylase kinase regulator activity GO:0008607
Modulation of the activity of the enzyme phosphorylase kinase.
11 Q23651 (/ISS) Q2KJ61 (/ISS) Q5HZM6 (/ISS) Q5HZM6 (/ISS) Q5RIC0 (/ISS) Q5RIC0 (/ISS) Q5ZHS1 (/ISS) Q60LW7 (/ISS) Q6NVL5 (/ISS) Q9CZX0 (/ISS)
(1 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
9 Q02908 (/IPI) Q02908 (/IPI) Q02908 (/IPI) Q02908 (/IPI) Q02908 (/IPI) Q02908 (/IPI) Q02908 (/IPI) Q02908 (/IPI) Q9H9T3 (/IPI)
Histone acetyltransferase activity GO:0004402
Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
8 Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA)
Histone acetyltransferase activity GO:0004402
Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
8 Q02908 (/ISS) Q02908 (/ISS) Q02908 (/ISS) Q02908 (/ISS) Q02908 (/ISS) Q02908 (/ISS) Q02908 (/ISS) Q02908 (/ISS)
Acetyltransferase activity GO:0016407
Catalysis of the transfer of an acetyl group to an acceptor molecule.
2 Q9H9T3 (/IDA) Q9VQZ6 (/IDA)
Phosphorylase kinase regulator activity GO:0008607
Modulation of the activity of the enzyme phosphorylase kinase.
1 Q9H9T3 (/IDA)
Phosphorylase kinase regulator activity GO:0008607
Modulation of the activity of the enzyme phosphorylase kinase.
1 Q9CZX0 (/ISO)
Acetyltransferase activity GO:0016407
Catalysis of the transfer of an acetyl group to an acceptor molecule.
1 Q9CZX0 (/ISO)

There are 39 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
12 Q1ZXC6 (/ISS) Q23651 (/ISS) Q2KJ61 (/ISS) Q5HZM6 (/ISS) Q5HZM6 (/ISS) Q5RIC0 (/ISS) Q5RIC0 (/ISS) Q5ZHS1 (/ISS) Q60LW7 (/ISS) Q6NVL5 (/ISS)
(2 more)
TRNA wobble uridine modification GO:0002098
The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
11 Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q23651 (/IMP) Q93ZR1 (/IMP)
(1 more)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
8 Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP) Q02908 (/IMP)
Neuron migration GO:0001764
The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature.
2 Q2KJ61 (/ISS) Q9H9T3 (/ISS)
Axonogenesis GO:0007409
De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells.
2 Q5RIC0 (/IMP) Q5RIC0 (/IMP)
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
2 Q2KJ61 (/ISS) Q9H9T3 (/ISS)
DNA mediated transformation GO:0009294
The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material.
2 Q93ZR1 (/IMP) Q93ZR1 (/IMP)
Regulation of auxin mediated signaling pathway GO:0010928
Any process that modulates the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin.
2 Q93ZR1 (/IMP) Q93ZR1 (/IMP)
Positive regulation of cell migration GO:0030335
Any process that activates or increases the frequency, rate or extent of cell migration.
2 Q2KJ61 (/ISS) Q9H9T3 (/ISS)
Organ growth GO:0035265
The increase in size or mass of an organ. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that function together as to perform a specific function.
2 Q93ZR1 (/IMP) Q93ZR1 (/IMP)
Cell division GO:0051301
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
2 Q93ZR1 (/IMP) Q93ZR1 (/IMP)
Specification of plant organ axis polarity GO:0090708
The process in which the polarity of a plant organ axis is specified.
2 Q93ZR1 (/IMP) Q93ZR1 (/IMP)
Regulation of leaf formation GO:2000025
Any process that modulates the frequency, rate or extent of leaf formation.
2 Q93ZR1 (/IMP) Q93ZR1 (/IMP)
Neuron migration GO:0001764
The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature.
1 Q9CZX0 (/IMP)
Instar larval development GO:0002168
The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster.
1 Q9VQZ6 (/IMP)
TRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation GO:0002926
The process whereby a wobble base uridine residue in a tRNA is modified to 5-methoxycarbonylmethyl-2-thiouridine.
1 O14023 (/IMP)
TRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation GO:0002926
The process whereby a wobble base uridine residue in a tRNA is modified to 5-methoxycarbonylmethyl-2-thiouridine.
1 Q9H9T3 (/TAS)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q9H9T3 (/IDA)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q9CZX0 (/ISO)
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q9H9T3 (/TAS)
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
1 Q9H9T3 (/TAS)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
1 Q23651 (/IMP)
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
1 Q23651 (/IGI)
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
1 Q9CZX0 (/IMP)
Locomotory behavior GO:0007626
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
1 Q9VQZ6 (/IMP)
Olfactory learning GO:0008355
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs in response to (repeated) exposure to an olfactory cue.
1 Q23651 (/IMP)
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
1 Q9VQZ6 (/IMP)
Peptidyl-lysine acetylation GO:0018394
The acetylation of peptidyl-lysine.
1 Q9VQZ6 (/IDA)
Hemopoiesis GO:0030097
The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
1 Q9VQZ6 (/IMP)
Positive regulation of cell migration GO:0030335
Any process that activates or increases the frequency, rate or extent of cell migration.
1 Q9CZX0 (/IMP)
Sleep GO:0030431
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
1 Q9VQZ6 (/IMP)
Vulval development GO:0040025
The process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult.
1 Q23651 (/IGI)
Embryonic morphogenesis GO:0048598
The process in which anatomical structures are generated and organized during the embryonic phase. The embryonic phase begins with zygote formation. The end of the embryonic phase is organism-specific. For example, it would be at birth for mammals, larval hatching for insects and seed dormancy in plants.
1 Q23651 (/IGI)
Oocyte development GO:0048599
The process whose specific outcome is the progression of an oocyte over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.
1 Q23651 (/IGI)
Cytoskeletal matrix organization at active zone GO:0048789
The assembly and arrangement of cytomatrix proteins to form complexes in the cell cortex beneath the active zone, i.e. just beneath the presynaptic plasma membrane.
1 Q9VQZ6 (/IMP)
Synapse organization GO:0050808
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell).
1 Q9VQZ6 (/IMP)
Synaptic growth at neuromuscular junction GO:0051124
The growth of a synapse at a neuromuscular junction, the site of apposition of a motor end plate and the subneural cleft of the skeletal muscle fiber that it innervates.
1 Q9VQZ6 (/IMP)
Regulation of cytoplasmic translational fidelity GO:0140018
Any process that modulates the ability of the cytoplasmic translational apparatus to interpret the genetic code.
1 O14023 (/IMP)
Regulation of photoreceptor cell axon guidance GO:2000289
Any process that modulates the frequency, rate or extent of photoreceptor cell axon guidance.
1 Q9VQZ6 (/IMP)

There are 19 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
11 Q23651 (/ISS) Q2KJ61 (/ISS) Q5HZM6 (/ISS) Q5HZM6 (/ISS) Q5RIC0 (/ISS) Q5RIC0 (/ISS) Q5ZHS1 (/ISS) Q60LW7 (/ISS) Q6NVL5 (/ISS) Q9CZX0 (/ISS)
(1 more)
Transcription elongation factor complex GO:0008023
Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.
11 Q23651 (/ISS) Q2KJ61 (/ISS) Q5HZM6 (/ISS) Q5HZM6 (/ISS) Q5RIC0 (/ISS) Q5RIC0 (/ISS) Q5ZHS1 (/ISS) Q60LW7 (/ISS) Q6NVL5 (/ISS) Q9CZX0 (/ISS)
(1 more)
Elongator holoenzyme complex GO:0033588
A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes.
11 Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q93ZR1 (/IDA) Q93ZR1 (/IDA)
(1 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
10 Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q93ZR1 (/IDA) Q93ZR1 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
10 Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q02908 (/IDA) Q9H9T3 (/IDA) Q9VQZ6 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
8 Q02908 (/TAS) Q02908 (/TAS) Q02908 (/TAS) Q02908 (/TAS) Q02908 (/TAS) Q02908 (/TAS) Q02908 (/TAS) Q02908 (/TAS)
Nuclear euchromatin GO:0005719
The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin.
2 Q93ZR1 (/IDA) Q93ZR1 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q93ZR1 (/IDA) Q93ZR1 (/IDA)
Elongator holoenzyme complex GO:0033588
A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes.
2 O14023 (/ISO) Q9CZX0 (/ISO)
Elongator holoenzyme complex GO:0033588
A heterohexameric protein complex that is involved in modification of wobble nucleosides in tRNA. The complex can associate physically with hyperphosphorylated RNA polymerase II; it contains two discrete heterotrimeric subcomplexes.
2 Q2KJ61 (/ISS) Q9CZX0 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9VQZ6 (/ISS)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q9H9T3 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q9CZX0 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 O14023 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9CZX0 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 O14023 (/HDA)
Transcription elongation factor complex GO:0008023
Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.
1 Q9H9T3 (/IDA)
Transcription elongation factor complex GO:0008023
Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.
1 Q9CZX0 (/ISO)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
1 Q9VQZ6 (/IDA)
CATH-Gene3D is a Global Biodata Core Resource Learn more...