The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
HUPs
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 193: Cryptochrome 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 10 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
FAD binding GO:0071949
Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
5 A9CJC9 (/IDA) A9CJC9 (/IDA) Q43125 (/IDA) Q96524 (/IDA) Q96524 (/IDA)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
3 Q43125 (/IPI) Q96524 (/IPI) Q96524 (/IPI)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
3 Q43125 (/IDA) Q96524 (/IDA) Q96524 (/IDA)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
3 Q43125 (/IPI) Q96524 (/IPI) Q96524 (/IPI)
Deoxyribodipyrimidine photo-lyase activity GO:0003904
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
2 A9CJC9 (/IDA) A9CJC9 (/IDA)
Blue light photoreceptor activity GO:0009882
The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation.
2 Q96524 (/ISS) Q96524 (/ISS)
Protein kinase activity GO:0004672
Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
1 Q43125 (/IDA)
Blue light photoreceptor activity GO:0009882
The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation.
1 Q43125 (/IDA)
Blue light photoreceptor activity GO:0009882
The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation.
1 Q43125 (/IMP)
Kinase activity GO:0016301
Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
1 Q43125 (/IDA)

There are 57 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Circadian rhythm GO:0007623
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
3 Q43125 (/IEP) Q96524 (/IEP) Q96524 (/IEP)
Response to water deprivation GO:0009414
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
3 Q43125 (/IGI) Q96524 (/IGI) Q96524 (/IGI)
Response to light stimulus GO:0009416
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
3 Q43125 (/IEP) Q96524 (/IEP) Q96524 (/IEP)
Response to light stimulus GO:0009416
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Response to blue light GO:0009637
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
3 Q43125 (/IDA) Q96524 (/IDA) Q96524 (/IDA)
Response to blue light GO:0009637
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Phototropism GO:0009638
The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Regulation of meristem growth GO:0010075
Any process involved in maintaining the size and shape of a meristem.
3 Q43125 (/IGI) Q96524 (/IGI) Q96524 (/IGI)
Stomatal movement GO:0010118
The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
3 Q43125 (/IGI) Q96524 (/IGI) Q96524 (/IGI)
Response to low fluence blue light stimulus by blue low-fluence system GO:0010244
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes.
3 Q43125 (/IEP) Q96524 (/IEP) Q96524 (/IEP)
Response to low fluence blue light stimulus by blue low-fluence system GO:0010244
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Circadian regulation of calcium ion oscillation GO:0010617
Any process that modulates the concentration of cytosolic free calcium ion
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Regulation of circadian rhythm GO:0042752
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Flavin adenine dinucleotide metabolic process GO:0072387
The chemical reactions and pathways involving flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Regulation of leaf morphogenesis GO:1901371
Any process that modulates the frequency, rate or extent of leaf morphogenesis.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Response to strigolactone GO:1902347
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a strigolactone stimulus.
3 Q43125 (/IMP) Q96524 (/IMP) Q96524 (/IMP)
Photoreactive repair GO:0000719
The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines.
2 A9CJC9 (/IMP) A9CJC9 (/IMP)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
2 Q96524 (/IMP) Q96524 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
2 Q96524 (/IMP) Q96524 (/IMP)
Response to blue light GO:0009637
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
2 Q96524 (/IEP) Q96524 (/IEP)
Response to absence of light GO:0009646
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
2 Q96524 (/IEP) Q96524 (/IEP)
Blue light signaling pathway GO:0009785
The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.
2 Q96524 (/IGI) Q96524 (/IGI)
Regulation of flower development GO:0009909
Any process that modulates the frequency, rate or extent of flower development.
2 Q96524 (/IDA) Q96524 (/IDA)
Positive regulation of flower development GO:0009911
Any process that activates or increases the frequency, rate or extent of flower development.
2 Q96524 (/IMP) Q96524 (/IMP)
Long-day photoperiodism, flowering GO:0048574
A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light that exceeds the critical day length. The critical day length varies between species. Although the term is long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 minus the critical day length.
2 Q96524 (/IMP) Q96524 (/IMP)
Defense response to virus GO:0051607
Reactions triggered in response to the presence of a virus that act to protect the cell or organism.
2 Q96524 (/IMP) Q96524 (/IMP)
Regulation of photoperiodism, flowering GO:2000028
Any process that modulates the frequency, rate or extent of photoperiodism, flowering.
2 Q96524 (/IDA) Q96524 (/IDA)
Positive regulation of reactive oxygen species metabolic process GO:2000379
Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process.
2 Q96524 (/IDA) Q96524 (/IDA)
Response to light stimulus GO:0009416
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
1 Q43125 (/IDA)
Detection of light stimulus GO:0009583
The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal.
1 Q43125 (/IMP)
Photomorphogenesis GO:0009640
The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis.
1 Q43125 (/IMP)
Response to high light intensity GO:0009644
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
1 Q43125 (/IMP)
Response to absence of light GO:0009646
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
1 Q43125 (/IMP)
Blue light signaling pathway GO:0009785
The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.
1 Q43125 (/TAS)
Response to red light GO:0010114
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
1 Q43125 (/IMP)
Photoprotection GO:0010117
Protection mechanism used by plants under conditions of excess energy absorption as a consequence of the light reactions of photosynthesis.
1 Q43125 (/IMP)
Stomatal movement GO:0010118
The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).
1 Q43125 (/IMP)
Response to far red light GO:0010218
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
1 Q43125 (/IMP)
Regulation of hydrogen peroxide metabolic process GO:0010310
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.
1 Q43125 (/IDA)
Singlet oxygen-mediated programmed cell death GO:0010343
Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes.
1 Q43125 (/IMP)
Anthocyanin-containing compound metabolic process GO:0046283
The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers.
1 Q43125 (/IMP)
Protein autophosphorylation GO:0046777
The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
1 Q43125 (/IDA)
Regulation of unidimensional cell growth GO:0051510
Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one
1 Q43125 (/IMP)
Oxidation-reduction process GO:0055114
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
1 Q43125 (/IMP)
Auxin transport GO:0060918
The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 Q43125 (/IMP)
Response to magnetism GO:0071000
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnetic stimulus.
1 Q43125 (/IDA)
Response to magnetism GO:0071000
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnetic stimulus.
1 Q43125 (/IMP)
Flavin adenine dinucleotide metabolic process GO:0072387
The chemical reactions and pathways involving flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes.
1 Q43125 (/IDA)
Flavin adenine dinucleotide metabolic process GO:0072387
The chemical reactions and pathways involving flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes.
1 Q43125 (/ISS)
Plant organ development GO:0099402
Development of a plant organ, a multi-tissue plant structure that forms a functional unit.
1 Q43125 (/IMP)
Positive regulation of defense response to bacterium GO:1900426
Any process that activates or increases the frequency, rate or extent of defense response to bacterium.
1 Q43125 (/IMP)
Negative regulation of lateral root development GO:1901332
Any process that stops, prevents or reduces the frequency, rate or extent of lateral root development.
1 Q43125 (/IMP)
Positive regulation of anion channel activity GO:1901529
Any process that activates or increases the frequency, rate or extent of anion channel activity.
1 Q43125 (/IMP)
Positive regulation of systemic acquired resistance GO:1901672
Any process that activates or increases the frequency, rate or extent of systemic acquired resistance.
1 Q43125 (/IMP)
Positive regulation of shade avoidance GO:1902448
Any process that activates or increases the frequency, rate or extent of shade avoidance.
1 Q43125 (/IMP)
Regulation of reactive oxygen species metabolic process GO:2000377
Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process.
1 Q43125 (/IDA)
Regulation of secondary cell wall biogenesis GO:2000652
Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis.
1 Q43125 (/IDA)

There are 5 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q43125 (/IDA) Q96524 (/IDA) Q96524 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 Q43125 (/IDA) Q96524 (/IDA) Q96524 (/IDA)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
3 Q43125 (/IDA) Q96524 (/IDA) Q96524 (/IDA)
Vacuole GO:0005773
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
2 Q96524 (/IDA) Q96524 (/IDA)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
2 Q96524 (/IMP) Q96524 (/IMP)
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