The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"P-loop containing nucleotide triphosphate hydrolases
".
FunFam 46: ATP-dependent DNA helicase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 12 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
54 |
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
P03018 (/IPI)
(44 more) |
DNA helicase activity GO:0003678
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
|
44 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(34 more) |
DNA translocase activity GO:0015616
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded DNA molecule.
|
41 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(31 more) |
Single-stranded DNA helicase activity GO:0017116
Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of single-stranded DNA; drives the unwinding of a DNA helix.
|
41 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(31 more) |
DNA helicase activity GO:0003678
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
|
15 |
Q5LU84 (/ISS)
Q87U01 (/ISS)
Q87U01 (/ISS)
Q9KVF6 (/ISS)
Q9KVF6 (/ISS)
Q9KVF6 (/ISS)
Q9KVF6 (/ISS)
Q9KVF6 (/ISS)
Q9KVH9 (/ISS)
Q9KVH9 (/ISS)
(5 more) |
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
DNA-dependent ATPase activity GO:0008094
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
DATP binding GO:0032564
Interacting selectively and non-covalently with dATP, deoxyadenosine triphosphate.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
3'-5' DNA helicase activity GO:0043138
Catalysis of the reaction: ATP + H2O = ADP + phosphate; drives the unwinding of the DNA helix in the direction 3' to 5'.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
DNA helicase activity GO:0003678
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
|
1 | Q10213 (/ISM) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
1 | Q02322 (/IPI) |
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Mismatch repair GO:0006298
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
|
53 |
G3XD04 (/IMP)
G3XD04 (/IMP)
G3XD04 (/IMP)
G3XD04 (/IMP)
G3XD04 (/IMP)
G3XD04 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
(43 more) |
Response to radiation GO:0009314
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
|
44 |
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
(34 more) |
Nucleotide-excision repair GO:0006289
A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
|
41 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(31 more) |
Replication fork processing GO:0031297
The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes.
|
41 |
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
(31 more) |
DNA duplex unwinding GO:0032508
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
|
41 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(31 more) |
Protein homooligomerization GO:0051260
The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
|
41 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(31 more) |
Rolling circle DNA replication GO:0070581
A DNA-dependent DNA replication process in which a single-stranded DNA molecule is synthesized from a circular duplex template. Replication typically does not cease when one circumference has been replicated, but continues around the circumference several more times, producing a long single strand comprising multimers of the replicon.
|
41 |
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
P03018 (/IMP)
(31 more) |
Double-strand break repair GO:0006302
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
|
9 | P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) |
UV protection GO:0009650
Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.
|
9 | P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) P9WMQ1 (/IMP) |
Negative regulation of strand invasion GO:0060543
Any process that decreases the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like strand and forms Watson-Crick base pairs with its complement, forming a duplex in which each strand is from one of the two recombining DNA molecules.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
8 | Q5LU84 (/ISS) Q87U01 (/ISS) Q87U01 (/ISS) Q9KVF6 (/ISS) Q9KVF6 (/ISS) Q9KVF6 (/ISS) Q9KVF6 (/ISS) Q9KVF6 (/ISS) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
7 | Q9KVH9 (/ISS) Q9KVH9 (/ISS) Q9KVH9 (/ISS) Q9KVH9 (/ISS) Q9KVH9 (/ISS) Q9KVH9 (/ISS) Q9KVH9 (/ISS) |
DNA unwinding involved in DNA replication GO:0006268
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
|
3 | P09980 (/IDA) P09980 (/IDA) P09980 (/IDA) |
Bacterial-type DNA replication GO:0044787
The DNA-dependent DNA replication, exemplified by prokaryotes, that occurs as part of the cell cycle. Prokaryotic DNA replication is bi-directional and originates at a single origin of replication on the circular genome.
|
3 | P09980 (/IMP) P09980 (/IMP) P09980 (/IMP) |
Recombinational repair GO:0000725
A DNA repair process that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous region of DNA.
|
1 | Q10213 (/IGI) |
Recombinational repair GO:0000725
A DNA repair process that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous region of DNA.
|
1 | Q10213 (/IMP) |
Postreplication repair GO:0006301
The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication.
|
1 | Q10213 (/IGI) |
Replication fork processing GO:0031297
The process in which a DNA replication fork that has stalled is restored to a functional state and replication is restarted. The stalling may be due to DNA damage, DNA secondary structure, bound proteins, dNTP shortage, or other causes.
|
1 | Q10213 (/TAS) |
Cellular response to UV GO:0034644
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
|
1 | Q10213 (/IMP) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
41 |
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
P03018 (/IDA)
(31 more) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
9 | P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
9 | P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) P9WMQ1 (/HDA) |
DNA helicase complex GO:0033202
A protein complex that possesses DNA helicase activity.
|
9 | P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) P9WMQ1 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q10213 (/HDA) |