The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
P-loop containing nucleotide triphosphate hydrolases
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 360: RAB9B, member RAS oncogene family

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 14 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
57 P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS)
(47 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
33 P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI) P24408 (/IPI)
(23 more)
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
17 P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA)
(7 more)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
15 P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS)
(5 more)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
14 P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS)
(4 more)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
13 P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS)
(3 more)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
12 P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA)
(2 more)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
12 P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA)
(2 more)
GDP binding GO:0019003
Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
4 Q8BHH2 (/ISO) Q8BHH2 (/ISO) Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
4 Q8BHH2 (/IPI) Q8BHH2 (/IPI) Q9R0M6 (/IPI) Q9R0M6 (/IPI)
GTPase activity GO:0003924
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
3 Q9HDY0 (/ISO) Q9R0M6 (/ISO) Q9R0M6 (/ISO)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
2 Q9R0M6 (/ISO) Q9R0M6 (/ISO)
GTP binding GO:0005525
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
1 Q99P75 (/TAS)
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
1 Q9VIW6 (/IPI)

There are 16 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Regulation of protein localization GO:0032880
Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location.
12 P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP)
(2 more)
Positive regulation of exocytosis GO:0045921
Any process that activates or increases the frequency, rate or extent of exocytosis.
12 P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP)
(2 more)
Negative regulation by host of symbiont molecular function GO:0052405
Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the functional activity of symbiont proteins. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
12 P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP) P51151 (/IMP)
(2 more)
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
5 Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS)
Regulation of protein localization GO:0032880
Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location.
2 Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Positive regulation of exocytosis GO:0045921
Any process that activates or increases the frequency, rate or extent of exocytosis.
2 Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Negative regulation by host of symbiont molecular function GO:0052405
Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the functional activity of symbiont proteins. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.
2 Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
1 Q9HDY0 (/IC)
Golgi to vacuole transport GO:0006896
The directed movement of substances from the Golgi to the vacuole.
1 Q9HDY0 (/ISO)
Endocytosis GO:0006897
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
1 Q9HDY0 (/ISO)
Small GTPase mediated signal transduction GO:0007264
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
1 Q9HDY0 (/ISM)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
1 Q9VIW6 (/ISS)
Rab protein signal transduction GO:0032482
A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
1 Q9VIW6 (/ISS)
Retrograde transport, endosome to Golgi GO:0042147
The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
1 Q9VIW6 (/IMP)
Retrograde transport, endosome to Golgi GO:0042147
The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
1 Q9VIW6 (/TAS)
Negative regulation of vacuole fusion, non-autophagic GO:0061192
Any process that decreases the frequency, rate or extent of the fusion of two vacuole membranes to form a single vacuole.
1 Q9HDY0 (/IMP)

There are 25 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
57 P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS)
(47 more)
Melanosome GO:0042470
A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
24 P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS) P24408 (/ISS)
(14 more)
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
17 P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA)
(7 more)
Late endosome GO:0005770
A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
13 P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA)
(3 more)
Lysosome GO:0005764
A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
12 P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA) P51151 (/IDA)
(2 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
12 P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS)
(2 more)
Transport vesicle GO:0030133
Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell.
12 P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS)
(2 more)
Trans-Golgi network membrane GO:0032588
The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
12 P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS) P51151 (/TAS)
(2 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
12 P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA) P51151 (/HDA)
(2 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
5 Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS)
Secretory granule membrane GO:0030667
The lipid bilayer surrounding a secretory granule.
5 Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS) Q9NP90 (/TAS)
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
4 Q8BHH2 (/ISO) Q8BHH2 (/ISO) Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Lysosome GO:0005764
A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
2 Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Late endosome GO:0005770
A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
2 Q9R0M6 (/ISO) Q9R0M6 (/ISO)
Cytoplasmic vesicle membrane GO:0030659
The lipid bilayer surrounding a cytoplasmic vesicle.
2 Q9R0M6 (/IDA) Q9R0M6 (/IDA)
Melanosome GO:0042470
A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
2 Q9R0M6 (/IDA) Q9R0M6 (/IDA)
Fungal-type vacuole membrane GO:0000329
The lipid bilayer surrounding a vacuole, the shape of which correlates with cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this structure is found in Saccharomyces cerevisiae.
1 Q9HDY0 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9HDY0 (/HDA)
Early endosome GO:0005769
A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
1 Q9VIW6 (/IDA)
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
1 Q9VIW6 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9HDY0 (/HDA)
Synaptic vesicle GO:0008021
A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.
1 Q9VIW6 (/HDA)
Vesicle GO:0031982
Any small, fluid-filled, spherical organelle enclosed by membrane.
1 Q9VIW6 (/ISS)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
1 Q9VIW6 (/HDA)
Recycling endosome GO:0055037
An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
1 Q9VIW6 (/HDA)
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