The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Tubulin/FtsZ, GTPase domain
".
FunFam 4: Tubulin alpha chain
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of cytoskeleton GO:0005200
The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
|
7 | P29511 (/ISS) P29511 (/ISS) P29511 (/ISS) P29511 (/ISS) P29511 (/ISS) P29511 (/ISS) P29511 (/ISS) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
7 | P29511 (/IPI) P29511 (/IPI) P29511 (/IPI) P29511 (/IPI) P29511 (/IPI) P29511 (/IPI) P29511 (/IPI) |
Structural constituent of cytoskeleton GO:0005200
The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
|
5 | Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) |
There are 6 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Seed trichome elongation GO:0090378
The process in which a seed trichome irreversibly increases in size in one
|
19 |
A9PL14 (/IEP)
A9PL14 (/IEP)
A9PL14 (/IEP)
A9PL15 (/IEP)
A9PL16 (/IEP)
A9PL17 (/IEP)
A9PL17 (/IEP)
A9PL18 (/IEP)
A9PL18 (/IEP)
A9PL19 (/IEP)
(9 more) |
Microtubule cytoskeleton organization GO:0000226
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
|
7 | P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) |
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
|
7 | P29511 (/IEP) P29511 (/IEP) P29511 (/IEP) P29511 (/IEP) P29511 (/IEP) P29511 (/IEP) P29511 (/IEP) |
Cellular response to gravity GO:0071258
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
|
7 | P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) P29511 (/IMP) |
Microtubule cytoskeleton organization GO:0000226
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
|
5 | Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) |
Microtubule-based process GO:0007017
Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
|
2 | P11139 (/ISS) P11139 (/ISS) |
There are 14 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
14 |
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
Q6ZLZ9 (/IDA)
(4 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
9 | P11139 (/IDA) P11139 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
9 | P11139 (/IDA) P11139 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Vacuole GO:0005773
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Microtubule GO:0005874
Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Tubulin complex GO:0045298
A heterodimer of tubulins alpha and beta that constitutes the protomer for microtubule assembly.
|
7 | P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) P29511 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
5 | Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) |
Microtubule GO:0005874
Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
|
5 | Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) Q4GYY5 (/TAS) |
Cortical cytoskeleton GO:0030863
The portion of the cytoskeleton that lies just beneath the plasma membrane.
|
5 | Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) |
Ciliary basal body GO:0036064
A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport.
|
5 | Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) Q4GYY5 (/IDA) |