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CATH Superfamily 3.40.190.10

Periplasmic binding protein-like II

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Periplasmic binding protein-like II
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 134: Nickel-binding periplasmic protein NikA

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
 15 P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI) P33590 (/IPI)
(5 more)
Nickel cation binding GO:0016151
Interacting selectively and non-covalently with nickel (Ni) cations.
 15 P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA)
(5 more)
Heme binding GO:0020037
Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
 15 P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA)
(5 more)
Transition metal ion binding GO:0046914
Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
 15 P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA)
(5 more)
Metal cluster binding GO:0051540
Interacting selectively and non-covalently with a cluster of atoms including both metal ions and nonmetal atoms, usually sulfur and oxygen. Examples include iron-sulfur clusters and nickel-iron-sulfur clusters.
 15 P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA)
(5 more)

There are 1 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Negative chemotaxis GO:0050919
The directed movement of a motile cell or organism towards a lower concentration of a chemical.
 15 P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP) P33590 (/IMP)
(5 more)

There are 3 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Outer membrane-bounded periplasmic space GO:0030288
The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
 15 P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA)
(5 more)
Outer membrane-bounded periplasmic space GO:0030288
The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
 15 P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM) P33590 (/ISM)
(5 more)
Periplasmic space GO:0042597
The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).
 15 P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA) P33590 (/IDA)
(5 more)