The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 3: Ribosomal RNA small subunit methyltransferase

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RRNA (pseudouridine) methyltransferase activity GO:0070037
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule.
11 O35130 (/ISO) O35130 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO)
(1 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
9 Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q92979 (/IPI)
RRNA binding GO:0019843
Interacting selectively and non-covalently with ribosomal RNA.
8 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
8 Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI) Q06287 (/IPI)
RRNA (pseudouridine) methyltransferase activity GO:0070037
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule.
8 Q06287 (/EXP) Q06287 (/EXP) Q06287 (/EXP) Q06287 (/EXP) Q06287 (/EXP) Q06287 (/EXP) Q06287 (/EXP) Q06287 (/EXP)
RRNA (pseudouridine) methyltransferase activity GO:0070037
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
RRNA (pseudouridine) methyltransferase activity GO:0070037
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule.
8 O35130 (/ISS) O35130 (/ISS) Q10107 (/ISS) Q96UP2 (/ISS) Q96UP2 (/ISS) Q9P8P7 (/ISS) Q9W4J5 (/ISS) Q9XX15 (/ISS)
RRNA (pseudouridine) methyltransferase activity GO:0070037
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule.
8 Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q92979 (/HDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q92979 (/ISS)
RRNA (pseudouridine) methyltransferase activity GO:0070037
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a pseudouridine residue in an rRNA molecule.
1 Q92979 (/IDA)

There are 18 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RRNA base methylation GO:0070475
The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule.
9 Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q06287 (/ISO) Q10107 (/ISO)
Endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000447
Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
Endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000472
Endonucleolytic cleavage between the 5'-External Transcribed Spacer (5'-ETS) and the 5' end of the SSU-rRNA of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
Endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000480
Endonucleolytic cleavage within the 5'-External Transcribed Spacer (ETS) of a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. Endonucleolytic cleavage within the 5'-ETS of the pre-RNA is conserved as one of the early steps of rRNA processing in all eukaryotes, but the specific position of cleavage is variable.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
RRNA methylation GO:0031167
The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
8 Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS)
Ribosomal small subunit biogenesis GO:0042274
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.
8 Q06287 (/IGI) Q06287 (/IGI) Q06287 (/IGI) Q06287 (/IGI) Q06287 (/IGI) Q06287 (/IGI) Q06287 (/IGI) Q06287 (/IGI)
Ribosomal small subunit biogenesis GO:0042274
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
RRNA base methylation GO:0070475
The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule.
8 Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP) Q06287 (/IMP)
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
5 Q8IB49 (/ISS) Q8IB49 (/ISS) Q8IB49 (/ISS) Q8IB49 (/ISS) Q9P8P7 (/ISS)
Blastocyst development GO:0001824
The process whose specific outcome is the progression of the blastocyst over time, from its formation to the mature structure. The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm.
2 O35130 (/IMP) O35130 (/IMP)
Nucleologenesis GO:0017126
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a nucleolus, a small, dense body one or more of which are present in the nucleus of eukaryotic cells.
2 O35130 (/IMP) O35130 (/IMP)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
1 Q92979 (/ISS)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
1 Q92979 (/TAS)
RRNA methylation GO:0031167
The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
1 Q9W4J5 (/ISS)
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
1 Q9P8P7 (/IGI)
Ribosomal small subunit biogenesis GO:0042274
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.
1 Q92979 (/ISS)
Defense response to bacterium GO:0042742
Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
1 Q9W4J5 (/IMP)

There are 18 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
12 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q57UH6 (/IDA) Q57UH6 (/IDA)
(2 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
10 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q92979 (/IDA) Q9P8P7 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
9 Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q06287 (/TAS) Q92979 (/TAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA)
Nuclear microtubule GO:0005880
Any microtubule in the nucleus of a cell.
8 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA)
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
8 Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA) Q06287 (/HDA)
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
8 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
8 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA)
Nuclear periphery GO:0034399
The portion of the nuclear lumen proximal to the inner nuclear membrane.
8 Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA) Q06287 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 O35130 (/ISO) O35130 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
2 O35130 (/ISO) O35130 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q10107 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q92979 (/ISS)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q92979 (/ISS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q92979 (/ISS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q10107 (/HDA)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
1 Q10107 (/ISO)
CATH-Gene3D is a Global Biodata Core Resource Learn more...