The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Ribosomal protein S10 domain
".
FunFam 2: 40S ribosomal protein S20
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
110 |
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
P60866 (/IPI)
(100 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
57 |
P55828 (/NAS)
P55828 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
(47 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
55 |
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
(45 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
55 |
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
(45 more) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
4 | P49200 (/IDA) P49200 (/IDA) Q9STY6 (/IDA) Q9STY6 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | P49200 (/IDA) P49200 (/IDA) Q9STY6 (/IDA) Q9STY6 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | P55828 (/TAS) P55828 (/TAS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
1 | O74893 (/ISO) |
There are 9 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
57 |
P55828 (/NAS)
P55828 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
P60866 (/NAS)
(47 more) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
55 |
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
(45 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
55 |
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
P60866 (/IC)
(45 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
55 |
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
(45 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
55 |
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
(45 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
55 |
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
(45 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | P55828 (/TAS) P55828 (/TAS) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
1 | O74893 (/ISO) |
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
|
1 | O74893 (/ISO) |
There are 20 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
115 |
A1XQU9 (/IDA)
P49200 (/IDA)
P49200 (/IDA)
P60866 (/IDA)
P60866 (/IDA)
P60866 (/IDA)
P60866 (/IDA)
P60866 (/IDA)
P60866 (/IDA)
P60866 (/IDA)
(105 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
56 |
O74893 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
P60867 (/ISO)
(46 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
55 |
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
(45 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
55 |
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
P60866 (/TAS)
(45 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
55 |
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
(45 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
55 |
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
(45 more) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
55 |
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
P60867 (/EXP)
(45 more) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
55 |
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
P60867 (/IDA)
(45 more) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
55 |
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
P60866 (/HDA)
(45 more) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
4 | P49200 (/IDA) P49200 (/IDA) Q9STY6 (/IDA) Q9STY6 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
4 | P49200 (/IDA) P49200 (/IDA) Q9STY6 (/IDA) Q9STY6 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | Q9STY6 (/IDA) Q9STY6 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
2 | Q9STY6 (/IDA) Q9STY6 (/IDA) |
Small ribosomal subunit GO:0015935
The smaller of the two subunits of a ribosome.
|
2 | P55828 (/NAS) P55828 (/NAS) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
2 | Q9STY6 (/IDA) Q9STY6 (/IDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
2 | Q9STY6 (/IDA) Q9STY6 (/IDA) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
2 | P55828 (/TAS) P55828 (/TAS) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
2 | Q9STY6 (/IDA) Q9STY6 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O74893 (/HDA) |
Cytoplasmic side of rough endoplasmic reticulum membrane GO:0098556
The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.
|
1 | A1XQU9 (/IDA) |