The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 67: regulator of nonsense transcripts 3A isoform X2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 7 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
7 Q9BZI7 (/IPI) Q9BZI7 (/IPI) Q9BZI7 (/IPI) Q9BZI7 (/IPI) Q9BZI7 (/IPI) Q9BZI7 (/IPI) Q9H1J1 (/IPI)
Structural constituent of nuclear pore GO:0017056
The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.
7 Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9H1J1 (/NAS)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
6 Q9BZI7 (/HDA) Q9BZI7 (/HDA) Q9BZI7 (/HDA) Q9BZI7 (/HDA) Q9BZI7 (/HDA) Q9BZI7 (/HDA)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
6 Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
5 Q3ULJ3 (/ISO) Q3ULL6 (/ISO) Q9CS15 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Telomeric DNA binding GO:0042162
Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
3 Q3ULJ3 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Telomeric DNA binding GO:0042162
Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
1 Q9H1J1 (/IDA)

There are 12 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
7 Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9H1J1 (/NAS)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
7 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9H1J1 (/TAS)
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
7 Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9H1J1 (/IDA)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
6 Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
6 Q9BZI7 (/IMP) Q9BZI7 (/IMP) Q9BZI7 (/IMP) Q9BZI7 (/IMP) Q9BZI7 (/IMP) Q9BZI7 (/IMP)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
6 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
6 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
6 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
6 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS)
Response to unfolded protein GO:0006986
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
5 Q3ULJ3 (/ISO) Q3ULL6 (/ISO) Q9CS15 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
5 Q3ULJ3 (/ISO) Q3ULL6 (/ISO) Q9CS15 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
2 Q3ULL6 (/ISO) Q9CS15 (/ISO)

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
10 A0A087WYC8 (/IDA) A0A087WYC8 (/IDA) A0A087WYC8 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9H1J1 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
9 A0A087WYC8 (/IDA) A0A087WYC8 (/IDA) A0A087WYC8 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9H1J1 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9H1J1 (/NAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
7 Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9BZI7 (/NAS) Q9H1J1 (/NAS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
7 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9H1J1 (/TAS)
Exon-exon junction complex GO:0035145
A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
7 Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9H1J1 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
6 Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS) Q9BZI7 (/TAS)
Microtubule organizing center GO:0005815
An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
6 Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA) Q9BZI7 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 Q3ULJ3 (/ISO) Q3ULL6 (/ISO) Q9CS15 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
5 Q3ULJ3 (/ISO) Q3ULL6 (/ISO) Q9CS15 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Exon-exon junction complex GO:0035145
A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
5 Q3ULJ3 (/ISO) Q3ULL6 (/ISO) Q9CS15 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
3 Q3ULJ3 (/ISO) Q9CTQ4 (/ISO) Q9CUH6 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
2 Q3ULL6 (/ISO) Q9CS15 (/ISO)
Microtubule organizing center GO:0005815
An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
2 Q3ULL6 (/ISO) Q9CS15 (/ISO)
Exon-exon junction complex GO:0035145
A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
1 Q9H1J1 (/TAS)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
1 Q9H1J1 (/IDA)
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