The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 59: splicing factor 3B subunit 4
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
19 |
O14102 (/IPI)
Q09442 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
Q15427 (/IPI)
(9 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
17 |
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
Q15427 (/HDA)
(7 more) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
2 | Q9ZU66 (/IDA) Q9ZU66 (/IDA) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
2 | Q24534 (/ISS) Q9W424 (/ISS) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | O14102 (/ISM) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
19 |
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
Q15427 (/IC)
(9 more) |
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
17 |
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
(7 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
17 |
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
(7 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
17 |
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
(7 more) |
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
|
17 |
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
(7 more) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
17 |
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
(7 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
4 | Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) |
Positive regulation of mRNA splicing, via spliceosome GO:0048026
Any process that activates or increases the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
4 | Q8QZY9 (/IMP) Q8QZY9 (/IMP) Q8QZY9 (/IMP) Q8QZY9 (/IMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
2 | Q24534 (/ISS) Q9W424 (/ISS) |
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
|
1 | O14102 (/TAS) |
There are 18 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
17 |
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
(7 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
17 |
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
(7 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
17 |
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
(7 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
17 |
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
Q15427 (/TAS)
(7 more) |
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
|
17 |
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
(7 more) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
17 |
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
Q15427 (/IDA)
(7 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
4 | Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) |
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
|
4 | Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
4 | Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) Q8QZY9 (/ISO) |
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
|
2 | Q24534 (/ISS) Q9W424 (/ISS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | Q9ZU66 (/IDA) Q9ZU66 (/IDA) |
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
|
2 | Q24534 (/HDA) Q9W424 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O14102 (/HDA) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
1 | Q55GD6 (/ISS) |
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
|
1 | O14102 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O14102 (/HDA) |
U2-type prespliceosome GO:0071004
A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation.
|
1 | O14102 (/ISO) |