The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 43: paraspeckle component 1 isoform X1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 26 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
E-box binding GO:0070888
Interacting selectively and non-covalently with an E-box, a DNA motif with the consensus sequence CANNTG that is found in the promoters of a wide array of genes expressed in neurons, muscle and other tissues.
38 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(28 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
26 P23246 (/IPI) P23246 (/IPI) P23246 (/IPI) P23246 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI)
(16 more)
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
20 P23246 (/ISA) P23246 (/ISA) P23246 (/ISA) P23246 (/ISA) Q15233 (/ISA) Q15233 (/ISA) Q15233 (/ISA) Q15233 (/ISA) Q15233 (/ISA) Q15233 (/ISA)
(10 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
20 P23246 (/HDA) P23246 (/HDA) P23246 (/HDA) P23246 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA)
(10 more)
RNA polymerase II distal enhancer sequence-specific DNA binding GO:0000980
Interacting selectively and non-covalently with a RNA polymerase II (Pol II) distal enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of some promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter.
18 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(8 more)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
18 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(8 more)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
14 Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI) Q15233 (/IPI)
(4 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
5 Q04047 (/ISS) Q04047 (/ISS) Q24113 (/ISS) Q7JPC7 (/ISS) Q8MS20 (/ISS)
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
4 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
4 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
4 P23246 (/IPI) P23246 (/IPI) P23246 (/IPI) P23246 (/IPI)
Histone deacetylase binding GO:0042826
Interacting selectively and non-covalently with the enzyme histone deacetylase.
4 P23246 (/IPI) P23246 (/IPI) P23246 (/IPI) P23246 (/IPI)
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
4 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA)
E-box binding GO:0070888
Interacting selectively and non-covalently with an E-box, a DNA motif with the consensus sequence CANNTG that is found in the promoters of a wide array of genes expressed in neurons, muscle and other tissues.
4 Q8R326 (/IDA) Q8VIJ6 (/IDA) Q99K48 (/IDA) Q99K48 (/IDA)
RNA polymerase II distal enhancer sequence-specific DNA binding GO:0000980
Interacting selectively and non-covalently with a RNA polymerase II (Pol II) distal enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of some promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter.
3 Q8VIJ6 (/IDA) Q99K48 (/IDA) Q99K48 (/IDA)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
3 Q8VIJ6 (/IDA) Q99K48 (/IDA) Q99K48 (/IDA)
Poly-pyrimidine tract binding GO:0008187
Interacting selectively and non-covalently with any stretch of pyrimidines (cytosine or uracil) in an RNA molecule.
3 Q24113 (/ISS) Q7JPC7 (/ISS) Q8MS20 (/ISS)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
2 Q04047 (/TAS) Q04047 (/TAS)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
2 Q99K48 (/ISO) Q99K48 (/ISO)
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
1 Q8VIJ6 (/IDA)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
1 Q8VIJ6 (/ISO)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q8R326 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q9U1N0 (/NAS)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
1 Q8VIJ6 (/ISO)
Histone deacetylase binding GO:0042826
Interacting selectively and non-covalently with the enzyme histone deacetylase.
1 Q8VIJ6 (/ISO)
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
1 Q8VIJ6 (/ISO)

There are 58 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Regulation of circadian rhythm GO:0042752
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
40 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(30 more)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
38 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(28 more)
Circadian rhythm GO:0007623
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
30 Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(20 more)
Activation of innate immune response GO:0002218
Any process that initiates an innate immune response. Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. Examples of this process include activation of the hypersensitive response of Arabidopsis thaliana and activation of any NOD or TLR signaling pathway in vertebrate species.
20 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA)
(10 more)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
18 P23246 (/TAS) P23246 (/TAS) P23246 (/TAS) P23246 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS)
(8 more)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
18 P23246 (/TAS) P23246 (/TAS) P23246 (/TAS) P23246 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS)
(8 more)
Negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway GO:1903377
Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway.
14 Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA)
(4 more)
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Spinal cord motor neuron differentiation GO:0021522
The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Midbrain-hindbrain boundary initiation GO:0021547
The regionalization process that gives rise to the midbrain-hindbrain boundary. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Ventricular system development GO:0021591
The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Rhombomere boundary formation GO:0021654
The process that gives rise to a rhombomere boundary. This process pertains to the initial formation of a boundary delimiting a rhombomere. Rhombomeres are transverse segments of the developing rhombencephalon that are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Central nervous system neuron axonogenesis GO:0021955
Generation of a long process from a neuron whose cell body resides in the central nervous system. The process carries efferent (outgoing) action potentials from the cell body towards target cells.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Negative regulation of axon regeneration GO:0048681
Any process that stops, prevents, or reduces the frequency, rate or extent of axon regeneration.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Formation of anatomical boundary GO:0048859
The process in which the limits of an anatomical structure are generated. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
6 A0A2R8Q1G3 (/IMP) I3ITB4 (/IMP) I3ITQ3 (/IMP) Q1L8R2 (/IMP) Q6DRK8 (/IMP) Q6NUU2 (/IMP)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
4 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
4 P23246 (/IGI) P23246 (/IGI) P23246 (/IGI) P23246 (/IGI)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
4 P23246 (/IMP) P23246 (/IMP) P23246 (/IMP) P23246 (/IMP)
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
4 P23246 (/IMP) P23246 (/IMP) P23246 (/IMP) P23246 (/IMP)
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
4 P23246 (/IMP) P23246 (/IMP) P23246 (/IMP) P23246 (/IMP)
Activation of innate immune response GO:0002218
Any process that initiates an innate immune response. Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. Examples of this process include activation of the hypersensitive response of Arabidopsis thaliana and activation of any NOD or TLR signaling pathway in vertebrate species.
4 Q8R326 (/ISO) Q8VIJ6 (/ISO) Q99K48 (/ISO) Q99K48 (/ISO)
Regulation of circadian rhythm GO:0042752
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
4 Q8R326 (/IMP) Q8VIJ6 (/IMP) Q99K48 (/IMP) Q99K48 (/IMP)
Negative regulation of circadian rhythm GO:0042754
Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior.
4 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
4 Q8R326 (/IDA) Q8VIJ6 (/IDA) Q99K48 (/IDA) Q99K48 (/IDA)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
4 P23246 (/IMP) P23246 (/IMP) P23246 (/IMP) P23246 (/IMP)
Histone H3 deacetylation GO:0070932
The modification of histone H3 by the removal of one or more acetyl groups.
4 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS)
Positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway GO:1902177
Any process that activates or increases the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway.
4 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
3 Q24113 (/ISS) Q7JPC7 (/ISS) Q8MS20 (/ISS)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
2 Q04047 (/IC) Q04047 (/IC)
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
2 A2BGU3 (/IMP) Q802Z5 (/IMP)
Visual perception GO:0007601
The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
2 Q04047 (/IMP) Q04047 (/IMP)
Visual perception GO:0007601
The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
2 Q04047 (/TAS) Q04047 (/TAS)
Circadian rhythm GO:0007623
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
2 Q99K48 (/ISO) Q99K48 (/ISO)
Visual behavior GO:0007632
The behavior of an organism in response to a visual stimulus.
2 Q04047 (/NAS) Q04047 (/NAS)
Phototaxis GO:0042331
The directed movement of a motile cell or organism in response to light.
2 Q04047 (/NAS) Q04047 (/NAS)
Male courtship behavior, veined wing generated song production GO:0045433
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
2 Q04047 (/IMP) Q04047 (/IMP)
Male courtship behavior, veined wing generated song production GO:0045433
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
2 Q04047 (/NAS) Q04047 (/NAS)
Male courtship behavior, veined wing generated song production GO:0045433
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
2 Q04047 (/TAS) Q04047 (/TAS)
Somite development GO:0061053
The progression of a somite from its initial formation to the mature structure. Somites are mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.
2 A2BGU3 (/IMP) Q802Z5 (/IMP)
Otic vesicle development GO:0071599
The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.
2 A2BGU3 (/IMP) Q802Z5 (/IMP)
Negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway GO:1903377
Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron intrinsic apoptotic signaling pathway.
2 Q99K48 (/ISO) Q99K48 (/ISO)
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
1 Q8VIJ6 (/ISO)
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
1 Q8VIJ6 (/ISO)
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
1 Q8VIJ6 (/ISO)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
1 Q9U1N0 (/NAS)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
1 Q8VIJ6 (/IMP)
Circadian rhythm GO:0007623
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
1 Q5FVM4 (/IMP)
Negative regulation of circadian rhythm GO:0042754
Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior.
1 Q8VIJ6 (/IMP)
Positive regulation of sister chromatid cohesion GO:0045876
Any process that activates or increases the frequency, rate or extent of sister chromatid cohesion.
1 Q8VIJ6 (/IMP)
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
1 Q8VIJ6 (/IMP)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
1 Q8VIJ6 (/ISO)
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
1 Q8VIJ6 (/ISS)
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
1 Q8VIJ6 (/IMP)
Regulation of cell cycle GO:0051726
Any process that modulates the rate or extent of progression through the cell cycle.
1 Q8VIJ6 (/IMP)
Histone H3 deacetylation GO:0070932
The modification of histone H3 by the removal of one or more acetyl groups.
1 Q8VIJ6 (/IMP)
Dendritic transport of messenger ribonucleoprotein complex GO:0098963
The directed movement of a messenger ribonucleoprotein complex along microtubules in nerve cell dendrites.
1 Q8VIJ6 (/IDA)
Dendritic transport of messenger ribonucleoprotein complex GO:0098963
The directed movement of a messenger ribonucleoprotein complex along microtubules in nerve cell dendrites.
1 Q8VIJ6 (/IMP)
Positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway GO:1902177
Any process that activates or increases the frequency, rate or extent of an oxidative stress-induced intrinsic apoptotic signaling pathway.
1 Q8VIJ6 (/ISO)

There are 24 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
35 A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA) A0A0S2Z4Z9 (/IDA)
(25 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
29 A0A2R8Q1G3 (/IDA) I3ITB4 (/IDA) I3ITQ3 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) Q04047 (/IDA) Q04047 (/IDA) Q15233 (/IDA)
(19 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
29 Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(19 more)
Paraspeckles GO:0042382
Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei.
20 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA)
(10 more)
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
18 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA) Q15233 (/IDA)
(8 more)
RNA polymerase II transcription factor complex GO:0090575
A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase II.
18 P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) P23246 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS) Q15233 (/ISS)
(8 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
14 Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS) Q15233 (/TAS)
(4 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
14 Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA) Q15233 (/HDA)
(4 more)
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
6 A0A2R8Q1G3 (/IDA) I3ITB4 (/IDA) I3ITQ3 (/IDA) Q1L8R2 (/IDA) Q6DRK8 (/IDA) Q6NUU2 (/IDA)
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
4 P23246 (/IDA) P23246 (/IDA) P23246 (/IDA) P23246 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
4 Q8R326 (/ISO) Q8VIJ6 (/ISO) Q99K48 (/ISO) Q99K48 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
4 P23246 (/TAS) P23246 (/TAS) P23246 (/TAS) P23246 (/TAS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q8VIJ6 (/ISO) Q99K48 (/ISO) Q99K48 (/ISO)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
3 Q24113 (/ISS) Q7JPC7 (/ISS) Q8MS20 (/ISS)
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
3 Q8VIJ6 (/ISO) Q99K48 (/ISO) Q99K48 (/ISO)
Paraspeckles GO:0042382
Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei.
3 Q8VIJ6 (/ISO) Q99K48 (/ISO) Q99K48 (/ISO)
RNA polymerase II transcription factor complex GO:0090575
A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase II.
3 Q8VIJ6 (/IDA) Q99K48 (/IDA) Q99K48 (/IDA)
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
2 Q8WXF1 (/IDA) Q8WXF1 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q04047 (/HDA) Q04047 (/HDA)
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
2 Q04047 (/HDA) Q04047 (/HDA)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
2 Q04047 (/HDA) Q04047 (/HDA)
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
1 Q8VIJ6 (/ISO)
Fibrillar center GO:0001650
A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.
1 Q8R326 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9U1N0 (/IDA)
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