CATH Superfamily 3.30.60.20
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 69: SET domain binding factor
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Rab guanyl-nucleotide exchange factor activity GO:0017112
Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
|
4 | O96610 (/IPI) Q7KSP6 (/IPI) Q960A9 (/IPI) Q9VGH9 (/IPI) |
Rab guanyl-nucleotide exchange factor activity GO:0017112
Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
|
4 | O96610 (/ISS) Q7KSP6 (/ISS) Q960A9 (/ISS) Q9VGH9 (/ISS) |
Rab GTPase binding GO:0017137
Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases.
|
4 | O96610 (/IPI) Q7KSP6 (/IPI) Q960A9 (/IPI) Q9VGH9 (/IPI) |
Phosphatase binding GO:0019902
Interacting selectively and non-covalently with any phosphatase.
|
4 | O96610 (/IPI) Q7KSP6 (/IPI) Q960A9 (/IPI) Q9VGH9 (/IPI) |
Protein binding, bridging GO:0030674
The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
|
4 | O96610 (/IPI) Q7KSP6 (/IPI) Q960A9 (/IPI) Q9VGH9 (/IPI) |
Phosphatidylinositol 3-kinase catalytic subunit binding GO:0036313
Interacting selectively and non-covalently with the catalytic subunit of a phosphatidylinositol 3-kinase. The catalytic subunit catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring.
|
4 | O96610 (/IPI) Q7KSP6 (/IPI) Q960A9 (/IPI) Q9VGH9 (/IPI) |
There are 9 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
|
4 | O96610 (/IMP) Q7KSP6 (/IMP) Q960A9 (/IMP) Q9VGH9 (/IMP) |
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Cortical actin cytoskeleton organization GO:0030866
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.
|
4 | O96610 (/IMP) Q7KSP6 (/IMP) Q960A9 (/IMP) Q9VGH9 (/IMP) |
Endocytic recycling GO:0032456
The directed movement of membrane-bounded vesicles from recycling endosomes back to the plasma membrane where they are recycled for further rounds of transport.
|
4 | O96610 (/IMP) Q7KSP6 (/IMP) Q960A9 (/IMP) Q9VGH9 (/IMP) |
Regulation of Rab protein signal transduction GO:0032483
Any process that modulates the frequency, rate or extent of Rab protein signal transduction.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Positive regulation of transcription elongation from RNA polymerase II promoter GO:0032968
Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
|
4 | O96610 (/IMP) Q7KSP6 (/IMP) Q960A9 (/IMP) Q9VGH9 (/IMP) |
Histone H3-K4 methylation GO:0051568
The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Positive regulation of autophagosome maturation GO:1901098
Any process that activates or increases the frequency, rate or extent of autophagosome maturation.
|
4 | O96610 (/IMP) Q7KSP6 (/IMP) Q960A9 (/IMP) Q9VGH9 (/IMP) |
There are 7 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Histone acetyltransferase complex GO:0000123
A protein complex that possesses histone acetyltransferase activity.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Polytene chromosome GO:0005700
A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Cell cortex GO:0005938
The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Transcription elongation factor complex GO:0008023
Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.
|
4 | O96610 (/IPI) Q7KSP6 (/IPI) Q960A9 (/IPI) Q9VGH9 (/IPI) |
Histone methyltransferase complex GO:0035097
A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |
Recycling endosome GO:0055037
An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
|
4 | O96610 (/IDA) Q7KSP6 (/IDA) Q960A9 (/IDA) Q9VGH9 (/IDA) |