The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Trafficking protein particle complex subunit 2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
18 P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI)
(8 more)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
15 P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI)
(5 more)
Ion channel binding GO:0044325
Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient.
15 P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI) P0DI81 (/IPI)
(5 more)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
3 Q9CQP2 (/ISS) Q9CQP2 (/ISS) Q9CQP2 (/ISS)
Ion channel binding GO:0044325
Interacting selectively and non-covalently with one or more specific sites on an ion channel, a protein complex that spans a membrane and forms a water-filled channel across the phospholipid bilayer allowing selective ion transport down its electrochemical gradient.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)

There are 12 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Skeletal system development GO:0001501
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
15 P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP) P0DI81 (/IMP)
(5 more)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
15 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(5 more)
Endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006888
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
15 P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS) P0DI81 (/NAS)
(5 more)
COPII vesicle coating GO:0048208
The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
15 P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS)
(5 more)
Skeletal system development GO:0001501
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
3 Q9CQP2 (/ISS) Q9CQP2 (/ISS) Q9CQP2 (/ISS)
Endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006888
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
2 Q9VUZ1 (/ISS) Q9VUZ1 (/ISS)
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
2 Q9VUZ1 (/IMP) Q9VUZ1 (/IMP)
DsRNA transport GO:0033227
The directed movement of dsRNA, double-stranded ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
2 Q9VUZ1 (/IMP) Q9VUZ1 (/IMP)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
1 Q9USZ5 (/IC)
Endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006888
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
1 Q9USZ5 (/ISO)

There are 18 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
51 D3ZVF4 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS) E2QV03 (/ISS)
(41 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
45 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(35 more)
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
45 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(35 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
45 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(35 more)
TRAPP complex GO:0030008
A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
18 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(8 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
15 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(5 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
15 P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS) P0DI81 (/TAS)
(5 more)
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
15 P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA) P0DI81 (/IDA)
(5 more)
TRAPP complex GO:0030008
A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
4 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9USZ5 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
3 Q9CQP2 (/ISO) Q9CQP2 (/ISO) Q9CQP2 (/ISO)
TRAPP complex GO:0030008
A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
2 Q9VUZ1 (/ISS) Q9VUZ1 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9USZ5 (/HDA)
Cis-Golgi network GO:0005801
The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.
1 Q9USZ5 (/IC)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9USZ5 (/HDA)
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