The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 9: AP complex subunit sigma

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
112 P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI) P56377 (/IPI)
(102 more)

There are 10 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0019886
The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Regulation of defense response to virus by virus GO:0050690
Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Visual learning GO:0008542
Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)
Synaptic vesicle budding from endosome GO:0016182
Budding of synaptic vesicles during the formation of constitutive recycling vesicles from early endosomes.
38 Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA) Q9DB50 (/IDA)
(28 more)
Synaptic vesicle budding from endosome GO:0016182
Budding of synaptic vesicles during the formation of constitutive recycling vesicles from early endosomes.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)
Synaptic vesicle recycling GO:0036465
The trafficking of synaptic vesicles from the pre-synaptic membrane so the vesicle can dock and prime for another round of exocytosis and neurotransmitter release. Recycling occurs after synaptic vesicle exocytosis, and is necessary to replenish presynaptic vesicle pools, sustain transmitter release and preserve the structural integrity of the presynaptic membrane. Recycling can occur following transient fusion with the presynaptic membrane (kiss and run), or via endocytosis of presynaptic membrane.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)
Fat cell differentiation GO:0045444
The process in which a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)
Neuromuscular process controlling balance GO:0050885
Any process that an organism uses to control its balance, the orientation of the organism (or the head of the organism) in relation to the source of gravity. In humans and animals, balance is perceived through visual cues, the labyrinth system of the inner ears and information from skin pressure receptors and muscle and joint receptors.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)
Adipose tissue development GO:0060612
The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat.
38 Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP) Q9DB50 (/IMP)
(28 more)

There are 10 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
148 P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA)
(138 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
148 P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA) P56377 (/IDA)
(138 more)
Golgi membrane GO:0000139
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Lysosomal membrane GO:0005765
The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
AP-type membrane coat adaptor complex GO:0030119
Any of several heterotetrameric complexes that link clathrin (or another coat-forming molecule, as hypothesized for AP-3 and AP-4) to a membrane surface; they are found on coated pits and coated vesicles, and mediate sorting of cargo proteins into vesicles. Each AP complex contains two large (a beta and one of either an alpha, gamma, delta, or epsilon) subunits (110-130 kDa), a medium (mu) subunit (approximately 50 kDa), and a small (sigma) subunit (15-20 kDa).
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Cytoplasmic vesicle membrane GO:0030659
The lipid bilayer surrounding a cytoplasmic vesicle.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Trans-Golgi network membrane GO:0032588
The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
74 P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS) P56377 (/TAS)
(64 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
38 Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO)
(28 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
38 Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO) Q9DB50 (/ISO)
(28 more)
CATH-Gene3D is a Global Biodata Core Resource Learn more...