The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 10: AP complex subunit sigma

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
15 O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) Q00381 (/IPI)
(5 more)

There are 7 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
15 Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS)
(5 more)
Protein targeting GO:0006605
The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
11 Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC)
(1 more)
Protein localization GO:0008104
Any process in which a protein is transported to, or maintained in, a specific location.
11 Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC) Q9Y587 (/IC)
(1 more)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
6 Q00381 (/IC) Q00381 (/IC) Q00381 (/IC) Q00381 (/IC) Q00381 (/IC) Q00381 (/IC)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
2 Q388H6 (/ISM) Q388H6 (/ISM)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
1 Q9WVL1 (/TAS)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
1 Q9WVL1 (/TAS)

There are 20 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Transport vesicle GO:0030133
Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell.
15 Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS)
(5 more)
Secretory granule GO:0030141
A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.
15 Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS) Q8IFN5 (/ISS)
(5 more)
AP-4 adaptor complex GO:0030124
An AP-type membrane coat adaptor complex that consists of beta4, epsilon, mu4 and sigma4 subunits and is found associated with membranes in the trans-Golgi network; it is not clear whether AP-4 forms clathrin coats in vivo.
11 Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA)
(1 more)
Endosome lumen GO:0031904
The volume enclosed by the membrane of an endosome.
11 Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS)
(1 more)
Trans-Golgi network membrane GO:0032588
The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
11 Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS) Q9Y587 (/TAS)
(1 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
11 Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA) Q9Y587 (/IDA)
(1 more)
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
9 O82201 (/IDA) O82201 (/IDA) O82201 (/IDA) O82201 (/IDA) O82201 (/IDA) O82201 (/IDA) O82201 (/IDA) O82201 (/IDA) O82201 (/IDA)
AP-4 adaptor complex GO:0030124
An AP-type membrane coat adaptor complex that consists of beta4, epsilon, mu4 and sigma4 subunits and is found associated with membranes in the trans-Golgi network; it is not clear whether AP-4 forms clathrin coats in vivo.
9 O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI) O82201 (/IPI)
AP-4 adaptor complex GO:0030124
An AP-type membrane coat adaptor complex that consists of beta4, epsilon, mu4 and sigma4 subunits and is found associated with membranes in the trans-Golgi network; it is not clear whether AP-4 forms clathrin coats in vivo.
8 Q3ZBB6 (/ISS) Q3ZBB6 (/ISS) Q3ZBB6 (/ISS) Q3ZBB6 (/ISS) Q3ZBB6 (/ISS) Q3ZBB6 (/ISS) Q3ZBB6 (/ISS) Q9WVL1 (/ISS)
Prospore membrane GO:0005628
The prospore membrane is a double-membraned structure that extends from the cytoplasmic face of the spindle pole bodies to encompass the spindle pole bodies and the four nuclear lobes that are formed during meiosis. It helps isolate the meiotic nuclei from the cytoplasm during spore formation and serves as a foundation for the formation of the spore walls. An example of this component is found in Schizosaccharomyces pombe.
6 Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
6 Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA)
Cellular bud neck GO:0005935
The constriction between the mother cell and daughter cell (bud) in an organism that reproduces by budding.
6 Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA) Q00381 (/HDA)
AP-2 adaptor complex GO:0030122
A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).
6 Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA)
AP-2 adaptor complex GO:0030122
A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).
6 Q00381 (/IPI) Q00381 (/IPI) Q00381 (/IPI) Q00381 (/IPI) Q00381 (/IPI) Q00381 (/IPI)
Clathrin-coated vesicle GO:0030136
A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
6 Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA) Q00381 (/IDA)
AP-4 adaptor complex GO:0030124
An AP-type membrane coat adaptor complex that consists of beta4, epsilon, mu4 and sigma4 subunits and is found associated with membranes in the trans-Golgi network; it is not clear whether AP-4 forms clathrin coats in vivo.
2 Q388H6 (/ISA) Q388H6 (/ISA)
Clathrin vesicle coat GO:0030125
A clathrin coat found on a vesicle.
2 Q388H6 (/ISM) Q388H6 (/ISM)
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
1 Q9WVL1 (/TAS)
AP-4 adaptor complex GO:0030124
An AP-type membrane coat adaptor complex that consists of beta4, epsilon, mu4 and sigma4 subunits and is found associated with membranes in the trans-Golgi network; it is not clear whether AP-4 forms clathrin coats in vivo.
1 Q9WVL1 (/ISO)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
1 Q9WVL1 (/ISO)
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