CATH Superfamily 3.30.450.60
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: AP complex subunit sigma
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
46 |
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
Q92572 (/IPI)
(36 more) |
Cargo receptor activity GO:0038024
Binding specifically to a substance (cargo) to deliver it to a transport vesicle. Cargo receptors span a membrane (either the plasma membrane or a vesicle membrane), binding simultaneously to cargo molecules and coat adaptors, to efficiently recruit soluble proteins to nascent vesicles.
|
4 | Q9W1E8 (/ISS) Q9W1E8 (/ISS) Q9W1E8 (/ISS) Q9W1E8 (/ISS) |
There are 18 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Anterograde axonal transport GO:0008089
The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons.
|
132 |
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
(122 more) |
Anterograde synaptic vesicle transport GO:0048490
The directed movement of synaptic vesicle along axonal microtubules from the cell body to the presynapse.
|
132 |
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
P59780 (/ISS)
(122 more) |
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
|
65 |
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
(55 more) |
Anterograde axonal transport GO:0008089
The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons.
|
65 |
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
(55 more) |
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
|
65 |
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
(55 more) |
Anterograde synaptic vesicle transport GO:0048490
The directed movement of synaptic vesicle along axonal microtubules from the cell body to the presynapse.
|
65 |
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
Q8BSZ2 (/IMP)
(55 more) |
Insulin receptor signaling pathway GO:0008286
The series of molecular signals generated as a consequence of the insulin receptor binding to insulin.
|
46 |
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
(36 more) |
Golgi to vacuole transport GO:0006896
The directed movement of substances from the Golgi to the vacuole.
|
8 | P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) Q59QC5 (/IMP) |
Protein targeting to vacuole GO:0006623
The process of directing proteins towards the vacuole, usually using signals contained within the protein.
|
7 | P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) |
Eye pigment biosynthetic process GO:0006726
The chemical reactions and pathways resulting in the formation of eye pigments, any general or particular coloring matter in living organisms, found or utilized in the eye.
|
4 | Q9W1E8 (/TAS) Q9W1E8 (/TAS) Q9W1E8 (/TAS) Q9W1E8 (/TAS) |
Ommochrome biosynthetic process GO:0006727
The chemical reactions and pathways resulting in the formation of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye.
|
4 | Q9W1E8 (/IMP) Q9W1E8 (/IMP) Q9W1E8 (/IMP) Q9W1E8 (/IMP) |
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
|
4 | Q57TU5 (/ISM) Q57TU5 (/ISM) Q57TU5 (/ISM) Q57TU5 (/ISM) |
Lysosome organization GO:0007040
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases.
|
4 | Q9W1E8 (/ISS) Q9W1E8 (/ISS) Q9W1E8 (/ISS) Q9W1E8 (/ISS) |
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
4 | Q57TU5 (/IMP) Q57TU5 (/IMP) Q57TU5 (/IMP) Q57TU5 (/IMP) |
Intracellular transport GO:0046907
The directed movement of substances within a cell.
|
4 | Q9W1E8 (/TAS) Q9W1E8 (/TAS) Q9W1E8 (/TAS) Q9W1E8 (/TAS) |
Compound eye pigmentation GO:0048072
Establishment of a pattern of pigment in the compound eye.
|
4 | Q9W1E8 (/IGI) Q9W1E8 (/IGI) Q9W1E8 (/IGI) Q9W1E8 (/IGI) |
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
|
1 | Q09905 (/IC) |
Golgi to vacuole transport GO:0006896
The directed movement of substances from the Golgi to the vacuole.
|
1 | Q09905 (/ISO) |
There are 15 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
|
92 |
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
A0A024RC62 (/IDA)
(82 more) |
AP-3 adaptor complex GO:0030123
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B).
|
66 |
Q09905 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
(56 more) |
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
|
65 |
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
Q8BSZ2 (/TAS)
(55 more) |
AP-3 adaptor complex GO:0030123
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B).
|
65 |
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
P59780 (/IDA)
(55 more) |
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
|
65 |
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
Q8BSZ2 (/ISO)
(55 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
46 |
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
Q9DCR2 (/IMP)
(36 more) |
AP-type membrane coat adaptor complex GO:0030119
Any of several heterotetrameric complexes that link clathrin (or another coat-forming molecule, as hypothesized for AP-3 and AP-4) to a membrane surface; they are found on coated pits and coated vesicles, and mediate sorting of cargo proteins into vesicles. Each AP complex contains two large (a beta and one of either an alpha, gamma, delta, or epsilon) subunits (110-130 kDa), a medium (mu) subunit (approximately 50 kDa), and a small (sigma) subunit (15-20 kDa).
|
46 |
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
(36 more) |
Transport vesicle GO:0030133
Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell.
|
46 |
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
Q92572 (/TAS)
(36 more) |
AP-3 adaptor complex GO:0030123
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B).
|
7 | P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) P47064 (/IMP) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | Q57TU5 (/IDA) Q57TU5 (/IDA) Q57TU5 (/IDA) Q57TU5 (/IDA) |
AP-3 adaptor complex GO:0030123
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B).
|
4 | Q57TU5 (/ISA) Q57TU5 (/ISA) Q57TU5 (/ISA) Q57TU5 (/ISA) |
AP-3 adaptor complex GO:0030123
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta3, delta, mu3 and sigma3 subunits and is found associated with endosomal membranes. AP-3 does not appear to associate with clathrin in all organisms. In at least humans, the AP-3 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (beta3A and beta3B, mu3A and mu3B, and sigma3A and sigma3B).
|
4 | Q9W1E8 (/ISS) Q9W1E8 (/ISS) Q9W1E8 (/ISS) Q9W1E8 (/ISS) |
Clathrin vesicle coat GO:0030125
A clathrin coat found on a vesicle.
|
4 | Q57TU5 (/ISM) Q57TU5 (/ISM) Q57TU5 (/ISM) Q57TU5 (/ISM) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q09905 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q09905 (/HDA) |