CATH Superfamily 3.30.420.100
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 2: 60S ribosomal protein L5
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 26 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
31 |
P09895 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
P26321 (/IPI)
(21 more) |
5S rRNA binding GO:0008097
Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
|
25 |
P09895 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
(15 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
17 |
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
(7 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
17 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(7 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
MRNA 3'-UTR binding GO:0003730
Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
|
12 |
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
P46777 (/IPI)
(2 more) |
MRNA 5'-UTR binding GO:0048027
Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Ubiquitin ligase inhibitor activity GO:1990948
Stops, prevents or reduces the activity of a ubiquitin ligase.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
10 | P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) P26321 (/IC) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
5 | Q9W5R8 (/ISS) Q9W5R8 (/ISS) Q9W5R8 (/ISS) Q9W5R8 (/ISS) Q9W5R8 (/ISS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | Q9W5R8 (/HDA) Q9W5R8 (/HDA) Q9W5R8 (/HDA) Q9W5R8 (/HDA) Q9W5R8 (/HDA) |
5S rRNA binding GO:0008097
Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
|
5 | Q9W5R8 (/NAS) Q9W5R8 (/NAS) Q9W5R8 (/NAS) Q9W5R8 (/NAS) Q9W5R8 (/NAS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | P49227 (/IDA) P49227 (/IDA) Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | Q8ILL3 (/ISS) Q8ILL3 (/ISS) Q8ILL3 (/ISS) Q8ILL3 (/ISS) |
5S rRNA binding GO:0008097
Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
|
4 | Q38CY8 (/ISA) Q38CY8 (/ISA) Q38CY8 (/ISA) Q38CY8 (/ISA) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
MRNA 3'-UTR binding GO:0003730
Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
5S rRNA binding GO:0008097
Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Ubiquitin protein ligase binding GO:0031625
Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
MRNA 5'-UTR binding GO:0048027
Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Ubiquitin ligase inhibitor activity GO:1990948
Stops, prevents or reduces the activity of a ubiquitin ligase.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | O74306 (/ISO) P52822 (/ISO) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
1 | P09895 (/IDA) |
There are 50 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
22 |
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
P26321 (/IMP)
(12 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
15 |
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
P26321 (/IC)
(5 more) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
|
12 |
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
(2 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
12 |
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
P46777 (/NAS)
(2 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
Ribosomal large subunit biogenesis GO:0042273
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis.
|
12 |
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
(2 more) |
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Protein stabilization GO:0050821
Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
|
12 |
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
(2 more) |
Regulation of signal transduction by p53 class mediator GO:1901796
Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
|
12 |
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
P46777 (/IMP)
(2 more) |
Negative regulation of ubiquitin protein ligase activity GO:1904667
Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin protein ligase activity.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Negative regulation of ubiquitin-dependent protein catabolic process GO:2000059
Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin-dependent protein catabolic process
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Negative regulation of protein neddylation GO:2000435
Any process that stops, prevents or reduces the frequency, rate or extent of protein neddylation.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
5 | Q9W5R8 (/ISS) Q9W5R8 (/ISS) Q9W5R8 (/ISS) Q9W5R8 (/ISS) Q9W5R8 (/ISS) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
5 | Q9W5R8 (/TAS) Q9W5R8 (/TAS) Q9W5R8 (/TAS) Q9W5R8 (/TAS) Q9W5R8 (/TAS) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
4 | Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
4 | Q8ILL3 (/ISS) Q8ILL3 (/ISS) Q8ILL3 (/ISS) Q8ILL3 (/ISS) |
Leaf morphogenesis GO:0009965
The process in which the anatomical structures of the leaf are generated and organized.
|
4 | P49227 (/IMP) P49227 (/IMP) Q8LBI1 (/IMP) Q8LBI1 (/IMP) |
Ribosome assembly GO:0042255
The aggregation, arrangement and bonding together of the mature ribosome and of its subunits.
|
4 | Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) |
Cell division GO:0051301
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
|
4 | P49227 (/IMP) P49227 (/IMP) Q8LBI1 (/IMP) Q8LBI1 (/IMP) |
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Positive regulation of phosphatase activity GO:0010922
Any process that increases the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Ribosomal large subunit biogenesis GO:0042273
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Protein stabilization GO:0050821
Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Regulation of signal transduction by p53 class mediator GO:1901796
Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Negative regulation of ubiquitin protein ligase activity GO:1904667
Any process that stops, prevents or reduces the frequency, rate or extent of ubiquitin protein ligase activity.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Positive regulation of isoleucine-tRNA ligase activity GO:1905017
Any process that activates or increases the frequency, rate or extent of isoleucine-tRNA ligase activity.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Positive regulation of methionine-tRNA ligase activity GO:1905020
Any process that activates or increases the frequency, rate or extent of methionine-tRNA ligase activity.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Positive regulation of threonine-tRNA ligase activity GO:1905023
Any process that activates or increases the frequency, rate or extent of threonine-tRNA ligase activity.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Negative regulation of ubiquitin-dependent protein catabolic process GO:2000059
Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin-dependent protein catabolic process
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Negative regulation of protein neddylation GO:2000435
Any process that stops, prevents or reduces the frequency, rate or extent of protein neddylation.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | O74306 (/ISO) P52822 (/ISO) |
Nucleocytoplasmic transport GO:0006913
The directed movement of molecules between the nucleus and the cytoplasm.
|
2 | Q8LBI1 (/TAS) Q8LBI1 (/TAS) |
Response to cytokinin GO:0009735
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
|
2 | Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Adaxial/abaxial pattern specification GO:0009955
The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
|
2 | Q8LBI1 (/IGI) Q8LBI1 (/IGI) |
Root morphogenesis GO:0010015
The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support.
|
2 | Q8LBI1 (/IMP) Q8LBI1 (/IMP) |
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
|
2 | O74306 (/ISO) P52822 (/ISO) |
Positive regulation of phosphatase activity GO:0010922
Any process that increases the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
|
1 | P09895 (/IDA) |
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
|
1 | Q7ZUI0 (/IMP) |
Cellular response to inorganic substance GO:0071241
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.
|
1 | P09895 (/IEP) |
Positive regulation of isoleucine-tRNA ligase activity GO:1905017
Any process that activates or increases the frequency, rate or extent of isoleucine-tRNA ligase activity.
|
1 | P09895 (/IMP) |
Positive regulation of methionine-tRNA ligase activity GO:1905020
Any process that activates or increases the frequency, rate or extent of methionine-tRNA ligase activity.
|
1 | P09895 (/IMP) |
Positive regulation of threonine-tRNA ligase activity GO:1905023
Any process that activates or increases the frequency, rate or extent of threonine-tRNA ligase activity.
|
1 | P09895 (/IMP) |
There are 48 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
32 |
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
(22 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
28 |
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
(18 more) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
24 |
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
A2RUM7 (/IDA)
(14 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
18 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(8 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
17 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(7 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
15 |
P09895 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
P26321 (/IDA)
(5 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
14 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(4 more) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
13 |
P09895 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(3 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
12 |
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
P46777 (/TAS)
(2 more) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
12 |
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
P46777 (/IDA)
(2 more) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
12 |
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
P46777 (/HDA)
(2 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
6 | P09895 (/ISS) P47962 (/ISS) P47962 (/ISS) P47962 (/ISS) Q4R5M0 (/ISS) Q58DW5 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
6 | P09895 (/ISS) P47962 (/ISS) P47962 (/ISS) P47962 (/ISS) Q4R5M0 (/ISS) Q58DW5 (/ISS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
5 | E9AF09 (/ISO) E9AF10 (/ISO) P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
5 | E9AF09 (/ISO) E9AF10 (/ISO) P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
5 | O74306 (/ISO) P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) P52822 (/ISO) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
5 | Q9W5R8 (/NAS) Q9W5R8 (/NAS) Q9W5R8 (/NAS) Q9W5R8 (/NAS) Q9W5R8 (/NAS) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
5 | Q9W5R8 (/HDA) Q9W5R8 (/HDA) Q9W5R8 (/HDA) Q9W5R8 (/HDA) Q9W5R8 (/HDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
5 | P09895 (/IDA) P49227 (/IDA) P49227 (/IDA) Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Vacuole GO:0005773
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
|
4 | P49227 (/IDA) P49227 (/IDA) Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
4 | Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) Q38CY8 (/ISM) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
4 | P49227 (/IDA) P49227 (/IDA) Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
4 | Q8ILL3 (/ISS) Q8ILL3 (/ISS) Q8ILL3 (/ISS) Q8ILL3 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Aminoacyl-tRNA synthetase multienzyme complex GO:0017101
A multienzyme complex found in all multicellular eukaryotes composed of eight proteins with aminoacyl-tRNA synthetase activities (abbreviated as: ArgRS, AspRS, GluProRS, GlnRS, IleRS, LeuRS, LysRS, MetRS where RS is the enzyme, preceded by the amino acid it uses as a substrate) as well as three non-synthetase proteins (p43, p38, and p18) with diverse functions. Several of these subunits are known dimers, so the total polypeptide count in the multisynthetase complex is at least fifteen. All of the enzymes in this assembly catalyze the same reaction, the covalent attachment of an amino acid to either the 2'- or 3'-hydroxyl of the 3'-terminal adenosine of tRNA, but using different substrates.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
3 | P47962 (/EXP) P47962 (/EXP) P47962 (/EXP) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
3 | P47962 (/IDA) P47962 (/IDA) P47962 (/IDA) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
3 | P47962 (/ISO) P47962 (/ISO) P47962 (/ISO) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
2 | Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
2 | Q8LBI1 (/IDA) Q8LBI1 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O74306 (/HDA) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
1 | P09895 (/EXP) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
1 | P09895 (/IDA) |
Aminoacyl-tRNA synthetase multienzyme complex GO:0017101
A multienzyme complex found in all multicellular eukaryotes composed of eight proteins with aminoacyl-tRNA synthetase activities (abbreviated as: ArgRS, AspRS, GluProRS, GlnRS, IleRS, LeuRS, LysRS, MetRS where RS is the enzyme, preceded by the amino acid it uses as a substrate) as well as three non-synthetase proteins (p43, p38, and p18) with diverse functions. Several of these subunits are known dimers, so the total polypeptide count in the multisynthetase complex is at least fifteen. All of the enzymes in this assembly catalyze the same reaction, the covalent attachment of an amino acid to either the 2'- or 3'-hydroxyl of the 3'-terminal adenosine of tRNA, but using different substrates.
|
1 | P09895 (/IDA) |
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
|
1 | Q54XX3 (/HDA) |